Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3820g00004 ATGAGGCTTTCTTCTTCAGGACTTGGTCAACCGGTTCAAGAAGATTGTGATTATACAGGGGAGAAAAAATGTTTAAATTCCGAATTATGGCATGCATGTGCTGGTCCTCTGGTGTCTCTGCCGCCTGTTGGAAGTCGTGTGGTCTACTTTCCCCAAGGTCATAGTGAGCAGGTTGCTGCTTCAACAAACAAGGAAATAGATGCACATATTCCCAATTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACTATGCATGCAGATGTGGAAACGGATGAAGTATATGCTCAAATGACTCTGCAACCTTTAAGTCCGCAAGAGCGAAAGGATATATATCTACTGCCTGCAGAATTGGGTACTGCCAGCAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTCCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCGCTGCAGCCTCCTGCACAGGAACTAATTGCCAGGGATCTCCATGATAATGAATGGAAATTCAGACACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTAACTACAGGGTGGAGTGTCTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGATAAAAATCAATTACTCTTGGGAATCCGGCGAGCAATTCGTCCACAGACTGTTATGCCGTCCTCAGTTTTGTCAAGTGACAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCACGCGGCTGCAACGAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTCATTCCCTTAGCCAAGTATGTCAAAGCTGTATATCATACCCGAGTTTCTGTTGGCATGCGATTTAGGATGTTATTCGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGTACTATAACAGGCATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCAGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGACAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAACCGTTGACAACATTCCCTATGTATCCATCCCCATTTCCTTTGAGGCTGAAACGCCCTTGGCCGTCAGGACTACCTTCTTTTGGTCTAAAAGATGGTGACATGAACATTGGTTCTCCATACACGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAGCCAACACTTGGTGCTTCCATGTCCGGACTTCAGCCAGAAATATACCAAGCAATGGCTGCTGCTGCACTTCAGGAAATGAGAGCAATGGGTCCGTCTAAACCTTCTTCTGAATCTCTGCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTTCTGGTATCCAGAGGCAAGTGTTACAGCAGTCTCAGTCCCAAAATGTCCTATACAACTTTCAAGAAAACCAGATTCCTTCTCAGTCTTCACTTCTGCAACGACAGATGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAGCAGCATCGACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAATGTTGTTTCTCCTTTGTCTAATTTTGCATCACCCACCCAGTTTGTCTCTCCACCCATGCCAGCCATTGCTTCAAATTGCCAGCAGCAGAGTTTCCCTGAACCTGCCAGGAACCAGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCACAGTCTACTTGGATCGCTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGAATGGATCCAACTCTCTGGTTTCTCCTGCTTCCTTACTACCCAAGCAAATAACTGCTGAACCTCAGTTTCATACTGCTGCTGCTCAGTGTGTATTACCCCAGGTGGGAAACTTGGGTACATCACACTCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCCAGGTGCCACTGATCCTCAGACCAATCTTTTGTTTGGGGTTAATATTGATCCTACTCTTATGTCACAAAATAGCATGTCAAACATGAGAAACGTTGGCAATGAGAATGATACATTATTGATGCCCTTTTCAGCTTCAAACTTCGGTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGATATGACAACATCAAGTTGTGTAGATGAATCTGGTTTTTTGCAGTCTTCAGAAAATGTGGAGCAAGCAAATACATCAACTGGAACCTTTGTCAAGGTTCACAAGTTAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTACGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTGTCTCCACTTGAAGTACAACAAATGGGCAGAGAAAGTTCTGGTCCCACGGCTTCTGCATTAGCCCACAGGCTTTCTACCACTGACAACTATGCGAGTCGGCAAGAGTTGAGAAATCCTAGCAATGGGATTGCGTCAATGGGGTCTCTAGACTATTAG 2694 0.4588 MRLSSSGLGQPVQEDCDYTGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEIDAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQERKDIYLLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRAIRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFGLKDGDMNIGSPYTWLQGGLGDQGMQSLNFQGLGVAPWMQPTLGASMSGLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNVPGAPSSGIQRQVLQQSQSQNVLYNFQENQIPSQSSLLQRQMQRYHPYNDQRQQQQQQHRPNSLPVQQQISNVVSPLSNFASPTQFVSPPMPAIASNCQQQSFPEPARNQNQIPSSDVSAIHSLLGSLPQDGVSQLLNMNGSNSLVSPASLLPKQITAEPQFHTAAAQCVLPQVGNLGTSHSNVSELPILPPFPGREYSAYPGATDPQTNLLFGVNIDPTLMSQNSMSNMRNVGNENDTLLMPFSASNFGGATGTDYPPSSDMTTSSCVDESGFLQSSENVEQANTSTGTFVKVHKLGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESSGPTASALAHRLSTTDNYASRQELRNPSNGIASMGSLDY 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3820g00004 897 ProSiteProfiles PB1 domain profile. 766 850 IPR000270 GO:0005515
Pral3820g00004 897 Gene3D - 762 855 - -
Pral3820g00004 897 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Pral3820g00004 897 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 855 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral3820g00004 897 SUPERFAMILY CAD & PB1 domains 757 840 - -
Pral3820g00004 897 SUPERFAMILY DNA-binding pseudobarrel domain 118 262 IPR015300 -
Pral3820g00004 897 CDD B3_DNA 132 233 IPR003340 GO:0003677
Pral3820g00004 897 FunFam Auxin response factor 297 369 - -
Pral3820g00004 897 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral3820g00004 897 Pfam AUX/IAA family 755 848 IPR033389 -
Pral3820g00004 897 FunFam Auxin response factor 761 855 - -
Pral3820g00004 897 FunFam Auxin response factor 131 235 - -
Pral3820g00004 897 MobiDBLite consensus disorder prediction 876 897 - -
Pral3820g00004 897 Gene3D - 131 235 IPR015300 -
Pral3820g00004 897 Gene3D - 297 369 - -
Pral3820g00004 897 MobiDBLite consensus disorder prediction 458 489 - -
Pral3820g00004 897 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Pral3820g00004 897 MobiDBLite consensus disorder prediction 464 489 - -
Pral3820g00004 897 SMART B3_2 133 235 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3820g00004 Pral-Chr3820 4843 13239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3820g00004 1 475 B3 DNA Binding Superfamily AT1G30330 84.760 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral3820g00004 AUX_IAA 1.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3820g00004 - - pcin:129302482 1535.39