Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3820g00003 ATGAGGCTTTCTTCTTCAGGACTTGGTCAACCGGTTCAAGAAGGGGAGAAAAAATGTTTAAATTCCGAATTATGGCATGCATGTGCTGGTCCTCTGGTGTCTCTGCCGCCTGTTGGAAGTCGTGTGGTCTACTTTCCCCAAGGTCATAGTGAGCAGGTTGCTGCTTCAACAAACAAGGAAATAGATGCACATATTCCCAATTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACTATGCATGCAGATGTGGAAACGGATGAAGTATATGCTCAAATGACTCTGCAACCTTTAAGTCCGCAAGAGCGAAAGGATATATATCTACTGCCTGCAGAATTGGGTACTGCCAGCAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTCCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCGCTGCAGCCTCCTGCACAGGAACTAATTGCCAGGGATCTCCATGATAATGAATGGAAATTCAGACACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTAACTACAGGGTGGAGTGTCTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGATAAAAATCAATTACTCTTGGGAATCCGGCGAGCAATTCGTCCACAGACTGTTATGCCGTCCTCAGTTTTGTCAAGTGACAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCACGCGGCTGCAACGAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTCATTCCCTTAGCCAAGTATGTCAAAGCTGTATATCATACCCGAGTTTCTGTTGGCATGCGATTTAGGATGTTATTCGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGTACTATAACAGGCATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCAGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGACAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAACCGTTGACAACATTCCCTATGTATCCATCCCCATTTCCTTTGAGGCTGAAACGCCCTTGGCCGTCAGGACTACCTTCTTTTGGTCTAAAAGATGGTGACATGAACATTGGTTCTCCATACACGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAGCCAACACTTGGTGCTTCCATGTCCGGACTTCAGCCAGAAATATACCAAGCAATGGCTGCTGCTGCACTTCAGGAAATGAGAGCAATGGGTCCGTCTAAACCTTCTTCTGAATCTCTGCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTTCTGGTATCCAGAGGCAAGTGTTACAGCAGTCTCAGTCCCAAAATGTCCTATACAACTTTCAAGAAAACCAGATTCCTTCTCAGTCTTCACTTCTGCAACGACAGATGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAGCAGCATCGACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAATGTTGTTTCTCCTTTGTCTAATTTTGCATCACCCACCCAGTTTGTCTCTCCACCCATGCCAGCCATTGCTTCAAATTGCCAGCAGCAGAGTTTCCCTGAACCTGCCAGGAACCAGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCACAGTCTACTTGGATCGCTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGAATGGATCCAACTCTCTGGTTTCTCCTGCTTCCTTACTACCCAAGCAAATAACTGCTGAACCTCAGTTTCATACTGCTGCTGCTCAGTGTGTATTACCCCAGGTGGGAAACTTGGGTACATCACACTCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCCAGGTGCCACTGATCCTCAGACCAATCTTTTGTTTGGGGTTAATATTGATCCTACTCTTATGTCACAAAATAGCATGTCAAACATGAGAAACGTTGGCAATGAGAATGATACATTATTGATGCCCTTTTCAGCTTCAAACTTCGGTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGATATGACAACATCAAGTTGTGTAGATGAATCTGGTTTTTTGCAGTCTTCAGAAAATGTGGAGCAAGCAAATACATCAACTGGAACCTTTGTCAAGGTTCACAAGTTAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTACGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTGTCTCCACTTGAAGTACAACAAATGGGCAGAGAAAGTTCTGGTCCCACGGCTTCTGCATTAGCCCACAGGCTTTCTACCACTGACAACTATGCGAGTCGGCAAGAGTTGAGAAATCCTAGCAATGGGATTGCGTCAATGGGGTCTCTAGACTATTAG 2679 0.4599 MRLSSSGLGQPVQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEIDAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQERKDIYLLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRAIRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFGLKDGDMNIGSPYTWLQGGLGDQGMQSLNFQGLGVAPWMQPTLGASMSGLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNVPGAPSSGIQRQVLQQSQSQNVLYNFQENQIPSQSSLLQRQMQRYHPYNDQRQQQQQQHRPNSLPVQQQISNVVSPLSNFASPTQFVSPPMPAIASNCQQQSFPEPARNQNQIPSSDVSAIHSLLGSLPQDGVSQLLNMNGSNSLVSPASLLPKQITAEPQFHTAAAQCVLPQVGNLGTSHSNVSELPILPPFPGREYSAYPGATDPQTNLLFGVNIDPTLMSQNSMSNMRNVGNENDTLLMPFSASNFGGATGTDYPPSSDMTTSSCVDESGFLQSSENVEQANTSTGTFVKVHKLGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESSGPTASALAHRLSTTDNYASRQELRNPSNGIASMGSLDY 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3820g00003 892 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Pral3820g00003 892 FunFam Auxin response factor 126 230 - -
Pral3820g00003 892 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Pral3820g00003 892 ProSiteProfiles PB1 domain profile. 761 845 IPR000270 GO:0005515
Pral3820g00003 892 FunFam Auxin response factor 756 850 - -
Pral3820g00003 892 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 850 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral3820g00003 892 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Pral3820g00003 892 MobiDBLite consensus disorder prediction 453 484 - -
Pral3820g00003 892 Gene3D - 292 364 - -
Pral3820g00003 892 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral3820g00003 892 SUPERFAMILY CAD & PB1 domains 752 835 - -
Pral3820g00003 892 CDD B3_DNA 127 228 IPR003340 GO:0003677
Pral3820g00003 892 MobiDBLite consensus disorder prediction 459 484 - -
Pral3820g00003 892 Gene3D - 757 850 - -
Pral3820g00003 892 FunFam Auxin response factor 292 364 - -
Pral3820g00003 892 SMART B3_2 128 230 IPR003340 GO:0003677
Pral3820g00003 892 Pfam AUX/IAA family 750 843 IPR033389 -
Pral3820g00003 892 Gene3D - 126 230 IPR015300 -
Pral3820g00003 892 MobiDBLite consensus disorder prediction 871 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3820g00003 Pral-Chr3820 4843 13239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3820g00003 1 470 B3 DNA Binding Superfamily AT1G30330 85.294 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral3820g00003 AUX_IAA 1.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3820g00003 - - pcin:129302482 1535.39