Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3820g00001 ATGAGGCTTTCTTCTTCAGGACTTGGTCAACCGGTTCAAGAAGGGGAGAAAAAATGTTTAAATTCCGAATTATGGCATGCATGTGCTGGTCCTCTGGTGTCTCTGCCGCCTGTTGGAAGTCGTGTGGTCTACTTTCCCCAAGGTCATAGTGAGCAGGTTGCTGCTTCAACAAACAAGGAAATAGATGCACATATTCCCAATTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACTATGCATGCAGATGTGGAAACGGATGAAGTATATGCTCAAATGACTCTGCAACCTTTAAGTCCGCAAGAGCGAAAGGATATATATCTACTGCCTGCAGAATTGGGTACTGCCAGCAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTCCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCGCTGCAGCCTCCTGCACAGGAACTAATTGCCAGGGATCTCCATGATAATGAATGGAAATTCAGACACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTAACTACAGGGTGGAGTGTCTTTGTTAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGATAAAAATCAATTACTCTTGGGAATCCGGCGAGCAATTCGTCCACAGACTGTTATGCCGTCCTCAGTTTTGTCAAGTGACAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCACGCGGCTGCAACGAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTCATTCCCTTAGCCAAGTATGTCAAAGCTGTATATCATACCCGAGTTTCTGTTGGCATGCGATTTAGGATGTTATTCGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGTACTATAACAGGCATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCACACTGGCGTTCAGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGACAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAACCGTTGACAACATTCCCTATGTATCCATCCCCATTTCCTTTGAGGCTGAAACGCCCTTGGCCGTCAGGACTACCTTCTTTTGGTAGCATGCATTGCTTTACTTGTGCAGTGAGTTACGTGGCATATTCTCCTTTGGCTCAACTTAATTGTTTCCCTTGTTTGTGTGCTTCAGGTCTAAAAGATGGTGACATGAACATTGGTTCTCCATACACGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTCTGAACTTCCAGGGACTGGGGGTTGCACCATGGATGCAGCCAACACTTGGTGCTTCCATGTCCGGACTTCAGCCAGAAATATACCAAGCAATGGCTGCTGCTGCACTTCAGGAAATGAGAGCAATGGGTCCGTCTAAACCTTCTTCTGAATCTCTGCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTTCTGGTATCCAGAGGCAAGTGTTACAGCAGTCTCAGTCCCAAAATGTCCTATACAACTTTCAAGAAAACCAGATTCCTTCTCAGTCTTCACTTCTGCAACGACAGATGCAGCGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAGCAGCAGCATCGACCTAACAGTTTACCTGTTCAGCAGCAGATCTCAAATGTTGTTTCTCCTTTGTCTAATTTTGCATCACCCACCCAGTTTGTCTCTCCACCCATGCCAGCCATTGCTTCAAATTGCCAGCAGCAGAGTTTCCCTGAACCTGCCAGGAACCAGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCACAGTCTACTTGGATCGCTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGAATGGATCCAACTCTCTGGTTTCTCCTGCTTCCTTACTACCCAAGCAAATAACTGCTGAACCTCAGTTTCATACTGCTGCTGCTCAGTGTGTATTACCCCAGGTGGGAAACTTGGGTACATCACACTCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCCAGGTGCCACTGATCCTCAGACCAATCTTTTGTTTGGGGTTAATATTGATCCTACTCTTATGTCACAAAATAGCATGTCAAACATGAGAAACGTTGGCAATGAGAATGATACATTATTGATGCCCTTTTCAGCTTCAAACTTCGGTGGTGCTACAGGGACTGATTATCCTCCAAGTTCAGATATGACAACATCAAGTTGTGTAGATGAATCTGGTTTTTTGCAGTCTTCAGAAAATGTGGAGCAAGCAAATACATCAACTGGAACCTTTGTCAAGGTTCACAAGTTAGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTACGATGAACTACGTAGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTGTCTCCACTTGAAGTACAACAAATGGGCAGAGAAAGTTCTGGTCCCACGGCTTCTGCATTAGCCCACAGGCTTTCTACCACTGACAACTATGCGAGTCGGCAAGAGTTGAGAAATCCTAGCAATGGGATTGCGTCAATGGGGTCTCTAGACTATTAG 2769 0.4586 MRLSSSGLGQPVQEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEIDAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQERKDIYLLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRAIRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFGSMHCFTCAVSYVAYSPLAQLNCFPCLCASGLKDGDMNIGSPYTWLQGGLGDQGMQSLNFQGLGVAPWMQPTLGASMSGLQPEIYQAMAAAALQEMRAMGPSKPSSESLLQFQQSSNVPGAPSSGIQRQVLQQSQSQNVLYNFQENQIPSQSSLLQRQMQRYHPYNDQRQQQQQQHRPNSLPVQQQISNVVSPLSNFASPTQFVSPPMPAIASNCQQQSFPEPARNQNQIPSSDVSAIHSLLGSLPQDGVSQLLNMNGSNSLVSPASLLPKQITAEPQFHTAAAQCVLPQVGNLGTSHSNVSELPILPPFPGREYSAYPGATDPQTNLLFGVNIDPTLMSQNSMSNMRNVGNENDTLLMPFSASNFGGATGTDYPPSSDMTTSSCVDESGFLQSSENVEQANTSTGTFVKVHKLGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESSGPTASALAHRLSTTDNYASRQELRNPSNGIASMGSLDY 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3820g00001 922 ProSiteProfiles PB1 domain profile. 791 875 IPR000270 GO:0005515
Pral3820g00001 922 Gene3D - 292 364 - -
Pral3820g00001 922 FunFam Auxin response factor 126 230 - -
Pral3820g00001 922 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Pral3820g00001 922 MobiDBLite consensus disorder prediction 489 514 - -
Pral3820g00001 922 FunFam Auxin response factor 292 364 - -
Pral3820g00001 922 MobiDBLite consensus disorder prediction 901 922 - -
Pral3820g00001 922 MobiDBLite consensus disorder prediction 483 514 - -
Pral3820g00001 922 Gene3D - 787 880 - -
Pral3820g00001 922 Pfam AUX/IAA family 780 873 IPR033389 -
Pral3820g00001 922 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral3820g00001 922 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Pral3820g00001 922 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Pral3820g00001 922 SUPERFAMILY CAD & PB1 domains 782 865 - -
Pral3820g00001 922 Gene3D - 126 230 IPR015300 -
Pral3820g00001 922 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 880 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral3820g00001 922 CDD B3_DNA 127 228 IPR003340 GO:0003677
Pral3820g00001 922 FunFam Auxin response factor 786 880 - -
Pral3820g00001 922 SMART B3_2 128 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3820g00001 Pral-Chr3820 4843 13245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3820g00001 1 500 B3 DNA Binding Superfamily AT1G30330 80.396 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral3820g00001 AUX_IAA 1.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3820g00001 - - pcin:129302482 1519.6