Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3812g00029 ATGTCCAGAGAGGTGGTGAAACATGAGTACATCACTGATGAGTTGAAAAGAAAAGCATCGTTCGTGAAAAGGAAAGCAAGTATCATGAAAAAAGTACGTGAACTTAGCATCCTTTGTGATGTTGAGGCTGGGGCAATCGTTTTCAATGGCCCCTCTGATCCTCAACCAGAGGTTTGGCCGGACCATGAAGGTGTCGAGCAAGTGATTGAGAGGTGCCAAGCTAAGCAGAAGAACTTGAACGGGGAGGAATCGATACAGAAGAGGATTAACAAAGGGAAAGAACTTCTGATGAGAAGAAGAGAAGAAAACCATAGAGAGGAGATTTCCCAACTTATGATCCTCTGTATGGCTGGGAAAACAATGCCCTCCCAAAAAGATTGGCCTGATATGAAGATGTTAGCGGAGCAGACTTTGAAGAACATAAACTGGACTGAGCAAGAATCTGCCAAAGAAAATGAAAATCTTACTGACCAACATCTGCAACATGGCATGGACATAGGAAATATGGAAGGTTATATGGGAATTGATGCATATGAGATGCCACAACCACCATCTAAAATTGCCAATTACCTATATGTTCCATCGTTTTACAACCCATTTTCTCCATGA 609 0.422 MSREVVKHEYITDELKRKASFVKRKASIMKKVRELSILCDVEAGAIVFNGPSDPQPEVWPDHEGVEQVIERCQAKQKNLNGEESIQKRINKGKELLMRRREENHREEISQLMILCMAGKTMPSQKDWPDMKMLAEQTLKNINWTEQESAKENENLTDQHLQHGMDIGNMEGYMGIDAYEMPQPPSKIANYLYVPSFYNPFSP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3812g00029 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pral3812g00029 202 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Pral3812g00029 202 CDD MADS_SRF_like 3 72 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral3812g00029 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3812g00029 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3812g00029 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3812g00029 202 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pral3812g00029 202 PANTHER MADS BOX PROTEIN 10 158 - -
Pral3812g00029 202 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Pral3812g00029 202 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3812g00029 Pral-Chr3812 159283 159972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3812g00029 6 142 Type I MADS-box Gene Family AT1G65300 37.063 2.92e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral3812g00029 SRF-TF 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3812g00029 - - pcin:129319512 206.453