Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3811g00002 ATGACGATGACACAGTGGACGCGCCATGAAGATAAGCTCCTCGAGCAGGCTATTGTCTTGTTTCCAGAGTGTTGCCCCAACCGCTGGGAGAAGATTGCCGACGCCGTCCCTGGCGCCACCGTCGATTTGGTCTGGCAGCGCTATCACGATCTCCTACATGACGTCGCTGAGATTGATGCCGGTCGGGTCCCGATTCCGGCCTTCCCTGACTTTCCATCTGATGCTGAGCCCTCCTCCTCTGATTGGAACTCTGCCAATCAAATTTCGTTCAACTCGAAGCCGCCTAAGAATACTGACACCGAAAGAAAGAAGGGCACGCCTTGGACTGAGGAAGAACATAGGTTATTCCTCAGAGGATTGGAGAAATATGGCAAGGGAGATTGGAGAAGCATTTCGAGGAATGTTGTGGTAACTAGAACGCCAACTCAGGTAGCTAGCCATGCTCAGAAGTATTTTAATCGCCAGAGGGAAAAAGCGAAGAAAGAGAGGAAAAGAGCAAGCATCCATGATATCACAACTGCAGACACCAACGTGGAGCCTCTGGATCAAAACCAGATTGGTTCTTCAAGCCTTCAATCTCAGATTGTCTCTTCAGGCCTTCCGGTGCATCAGTCCTCACCAATGCTTCAATTTAACCCACAGAATCCTTCAATTGATCAGTCTCTTGGGTTTGGGTACCCAAACTATGCTTTTTCCAACTTAGAGATAGATGACATGCACTATTGA 726 0.489 MTMTQWTRHEDKLLEQAIVLFPECCPNRWEKIADAVPGATVDLVWQRYHDLLHDVAEIDAGRVPIPAFPDFPSDAEPSSSDWNSANQISFNSKPPKNTDTERKKGTPWTEEEHRLFLRGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKYFNRQREKAKKERKRASIHDITTADTNVEPLDQNQIGSSSLQSQIVSSGLPVHQSSPMLQFNPQNPSIDQSLGFGYPNYAFSNLEIDDMHY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3811g00002 241 CDD SANT 6 52 IPR001005 -
Pral3811g00002 241 FunFam transcription factor MYB1R1 106 157 - -
Pral3811g00002 241 SMART sant 104 154 IPR001005 -
Pral3811g00002 241 SMART sant 2 54 IPR001005 -
Pral3811g00002 241 ProSiteProfiles Myb-like domain profile. 100 152 IPR001005 -
Pral3811g00002 241 SUPERFAMILY Homeodomain-like 101 156 IPR009057 -
Pral3811g00002 241 ProSiteProfiles SANT domain profile. 103 156 IPR017884 -
Pral3811g00002 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Pral3811g00002 241 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
Pral3811g00002 241 SUPERFAMILY Homeodomain-like 5 58 IPR009057 -
Pral3811g00002 241 FunFam Transcription factor SRM1 1 65 - -
Pral3811g00002 241 CDD SANT 107 152 IPR001005 -
Pral3811g00002 241 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Pral3811g00002 241 Gene3D - 106 157 - -
Pral3811g00002 241 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Pral3811g00002 241 Gene3D - 2 65 - -
Pral3811g00002 241 MobiDBLite consensus disorder prediction 69 108 - -
Pral3811g00002 241 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 217 IPR043363 -
Pral3811g00002 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 156 IPR017930 -
Pral3811g00002 241 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3811g00002 Pral-Chr3811 30860 32780 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3811g00002 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3811g00002 - - minc:123230341 243.047