Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3810g00043 ATGAGCAGCAACACATCGGAGCCTGATGATGGCTCCTCGGCAGACTTAAACGGATATGCCTATTACTCCTTCGGACTATCCGTCGCAGTTGTTCTTCTCTTCGCATTAATCACTTTCCTCTTGTACTTGTACGCCCGCAGAAACGCCACCATCAACACATCTCAACTATCACCAGATTTCACCCCCAGCTTTCGCTTACAGACCGTCGGAGATTCGAATCGTCTGCAAGTAGGTGTGGATGAAGCCACCCTGAAGAGTTATCCGGTGATGTTATACTCTGAAGCGAAGCGCCATCGGAAGTGTGATTTGGCGGCCACTTGCTCGATCTGTTTGGGGGATTACAATGAAAGTGAGTGGTTGAGGGAGTTGCCGGATTGTGGTCACTTGTTTCACCGGAAGTGTATCGATATGTGGCTGAGGATGAGCTCTTCGTGTCCGCTGTGCCGGACCTCGCCGCTTCCGACGCCGGTTTCAACTCCGCTGGCCGAAGTTGCTGTCTTGGCAAGATCAGGGGCTTGA 519 0.5202 MSSNTSEPDDGSSADLNGYAYYSFGLSVAVVLLFALITFLLYLYARRNATINTSQLSPDFTPSFRLQTVGDSNRLQVGVDEATLKSYPVMLYSEAKRHRKCDLAATCSICLGDYNESEWLRELPDCGHLFHRKCIDMWLRMSSSCPLCRTSPLPTPVSTPLAEVAVLARSGA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3810g00043 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Pral3810g00043 172 Pfam Ring finger domain 106 149 IPR001841 -
Pral3810g00043 172 FunFam E3 ubiquitin-protein ligase ATL6 67 154 - -
Pral3810g00043 172 CDD RING-H2_EL5-like 107 149 - -
Pral3810g00043 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 163 IPR045899 -
Pral3810g00043 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Pral3810g00043 172 SUPERFAMILY RING/U-box 83 155 - -
Pral3810g00043 172 SMART ring_2 107 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3810g00043 Pral-Chr3810 347907 348425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3810g00043 15 172 C3H Transcription Factor Family AT2G35910 48.101 3.48e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3810g00043 - - pcin:129304115 205.682