Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3809g00008 ATGCCCGTGCAATCCACTGTGAAGCGGTCTGGGTCGTCTGATCAAAGTACGTCTTTTGAGGCTGAGGATGATTCATTATGCAAAACAAGTCGTCGAAGAAGAAACAATCAAAAGGTCATCAGAATCATAATTACCGACCACGATGCTACAGATTCCGACACTTGCAGCGATGAAGATGATGCAGAGAAACGTCGAAGGTTACGAAGGGTTAAGAAGCATATAACAGAGATCAGTATGAATGTTCCCTCATCTCGGTCGACTTCCTCTTCTCTTGCTCGTTTCACGAAACACGACCGTACTATCTTGAAGAGACCTAAGAAATCTCCGTCTCGCTGCCATAACAAGTACAGGGGTGTTCGTCGGAGGCCGTGGGGGCGGTGGGCCGCTGAGATCCGAGACCCGACGCGTCGGAAAAGACTGTGGCTGGGAACCTTTGACACGGCGGAGGAAGCCGCCAGCGAGTACGACAAGGCTGCAATCATGCTCAAGGGTGCGAACGCCGTCACGAACTTCCCTAACTACGTCGTGACGGAGAAAGAAACACGGCGGGTAACAGTGGACACAACACCAAACACCGAGGGATTCGCCTCCTCCATGGCGTCTCCGACGTCGGTACTGGCCTACGACAGCGATTATTCAACGGCGGCGTTCGAGGGTTTCTGCTTCGGCGACGTCGTCGATCCATTGGGCTTCGAATTCGATATCGAGGTGCCGTTGACGGACATGAACGTGGTTGGGTTCGGTGGTCAGAAGAAGTCGGAGGGTGAAGAATTCGAAGACTTTGACGCGGACGAGTTCTTGACGTGGCCTGACTCAATTGGAAAAAGGCCTTAA 834 0.524 MPVQSTVKRSGSSDQSTSFEAEDDSLCKTSRRRRNNQKVIRIIITDHDATDSDTCSDEDDAEKRRRLRRVKKHITEISMNVPSSRSTSSSLARFTKHDRTILKRPKKSPSRCHNKYRGVRRRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAASEYDKAAIMLKGANAVTNFPNYVVTEKETRRVTVDTTPNTEGFASSMASPTSVLAYDSDYSTAAFEGFCFGDVVDPLGFEFDIEVPLTDMNVVGFGGQKKSEGEEFEDFDADEFLTWPDSIGKRP 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3809g00008 277 FunFam Ethylene-responsive transcription factor 2 114 173 - -
Pral3809g00008 277 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Pral3809g00008 277 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Pral3809g00008 277 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Pral3809g00008 277 SUPERFAMILY DNA-binding domain 115 173 IPR016177 GO:0003677
Pral3809g00008 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 207 - -
Pral3809g00008 277 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Pral3809g00008 277 MobiDBLite consensus disorder prediction 1 23 - -
Pral3809g00008 277 CDD AP2 115 173 IPR001471 GO:0003700|GO:0006355
Pral3809g00008 277 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Pral3809g00008 277 MobiDBLite consensus disorder prediction 1 30 - -
Pral3809g00008 277 PIRSF PTI6 9 271 IPR017392 GO:0003700
Pral3809g00008 277 Gene3D AP2/ERF domain 114 174 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3809g00008 Pral-Chr3809 494178 495262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3809g00008 34 233 AP2-EREBP Transcription Factor Family AT4G27950 42.453 1.58e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3809g00008 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3809g00008 K13434 - gmx:100800489 224.557