Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3809g00002 ATGGAGTCCGACATTTGCGTGAATACTTCCTGCGGAGAAGTTACTGCTCACGAGTGGAAGAAGGGGTGGATGCTGCGATCTGGTGGATTTGCCAAACTCTGTGATAAGTGCGGATCTGCCTATGAAAATTTGGTTTTCTGTAAAAAGTTCCACCTTGAAGAAGCTGGTTGGAGGAAGTGCAACTTCTGCAAAACGCCTATTCACTGCGGATGCATAGCATCTAAATCTTTGTTCGAGTACCTTGATTTTGGTGGTATAGGCTGTATTAACTGTGTAAAGTCTCCCCAGCTGCATTTGATGCAAAATAGTGAAATTTCTAATGGGTCTATTACATCAACCAAAAATGTTGCAAGTGACCGACATTCTTGTCATATTGATGGTAGAATCTCTGTGGATAGTGGTCGCGAAGGGAAACTTATGCAGCTGTGCAAAATTGTTGAAGCTAGTGATTCTAGCCGCTGGACTCAAGTTCAGAGAGATGGGATACTTTTATCTAGTGGGCAGACCAGCCAGGACGTTAAATGTCCAATAAGGGAAGTGGATTTAGAATTTTCAAACGTGATGAATCCATCTGTTCAGTCATTAACATTTGCTAAATTAGAAAATAGCAGACCAGCATGGGAGCTAAAGAATATGCATGAATTACCCGTGCAGCCATCATTGTGTATGTCTCTGGGAACTCCATCAGGAAACTCTATCTTGCCTGCTGCTGGAGAAACTGTAGAAGGAAGAGGTGAGGAAAAGCCATCTCCTTTTCATCAAGGGCAAAGATCTCGGCCTATATTGCCCAAACCACCAAAGAGTGGACTAACCATAAATCATGAGACAAATAAAGGCATGCTTTCTCAGCCACGAATAGCGCGGCCCCCTGCTGAGGCAAGATGCAAGAATCAGTTGCTTCCTCGATATTGGCCCCGGATCACTGATAAAGAGTTGGAGCAATTGTCTGGAGATTTGAAGTCCACTGTAGTGCCACTATTTGAGAAGGTGTTGAGCGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTTCCAAAAGCATGTGCTGAAGCTTATTTTCCTCCCATTTCTCAATCAGAAGGTCTTCCTTTGCATATCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTTCGATTTTGGCCCAATAACAACAGTAGGATGTATGTATTGGAGGGCGTCACTCCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTAATATTTAGTCGGATAGATCCCGGAGGTAAACTTGTTCTCGGTTTTAGGAAGGCATCTAATTCTGTAGATGCACAGGACGCCTCCCCATCTGCACCTTCAAATGGCATTCCAATGAAGGATACCTCGTGTTCTGGGGTCACTGAGAAACTTCACTTGGAAAACGGTTATCCTGTTCTTCTCCTGTCGATGAAGGGGAACAGGGAAGCTTGCTCAAATGGACTTTCAGAACATCTGCATTTGAATAGAATGGATGCTGGTTTGCCTAAGTCTGAAAATTGTGGGAGCATGACAAACAATGATTCCCTGCGGCAGCCAATTACAGTTTCAGAGAAGAAGAGGACTCGTAATATTGGGTCTAAGAGTAAGAGGTTGCTCATTCATAGTGAAGATGCCCTGGAGTTGAGACTTACTTGGGAAGAAGCTCAGGACTTACTTCGTCCACCTAGTGTCAAGCCCAGCATTGTTACAATAGAGGACCATGTATTTGAAGAGTATGATGAACCCCCTGTTTTTGGAAAGAGGACTTTTTTCACTACACATTCATCTGGCAGACAAGATCAATGGGCTCAATGTGATGACTGCTGTAAATGGCGAAGGCTGCCAGTAGATGTTCTACTTCCTCCTAAGTGGACATGCTCAGAAAATGAGTGGGATGATAGCAGGTCTCTGTGTTCTGCACCAGAGGAGCTCAGTCCAAAGGAGTTGGAAAATCTTCTGAGAACTAGCAAAGGTTCTAAGAAGAGAAGAATTGAAGAAGACAGGAAGTCACCCCAAGAGCATGAAACTTCCGGCTTAGATGCTCTTGCCAGTGTGGCAGTTTTAGGAGACAATTTTCTTTCCCCTGCTGAGTCATCTGCAGGAATCACCACCAAACATCCTCGACACCGTCCAGGATGCACCTGCATAGTGTGCATCCAGCCACCAAGTGGGAAGGGGAGACACAAGCCGACATGTATTTGCAATGTGTGCATGACCGTGAAACGCCGTTTCAAAACCCTCATGATGCGTAAAAAGAAACGGCAATCAGAACGTGAAGCAGATGCCACTGAGAAGGAAGCAGGCCACCAGAGGGATGCATCTGAAATGAATGGGGCTTCAAGGGACGATACAATTTGTTTAGAAAAAGGGGGTGACCTAGTCACAGGTCAAACTGATGTCAGTGAACCCAGTACTGGACAAATAGATCTGAATTGTCATCCCAAACGTGAAGAAATACTAGTTGATGAAACAGAACTGAGCATGACCAGTCATCTTGAAACAACTAACTATCTACAATAA 2505 0.4463 MESDICVNTSCGEVTAHEWKKGWMLRSGGFAKLCDKCGSAYENLVFCKKFHLEEAGWRKCNFCKTPIHCGCIASKSLFEYLDFGGIGCINCVKSPQLHLMQNSEISNGSITSTKNVASDRHSCHIDGRISVDSGREGKLMQLCKIVEASDSSRWTQVQRDGILLSSGQTSQDVKCPIREVDLEFSNVMNPSVQSLTFAKLENSRPAWELKNMHELPVQPSLCMSLGTPSGNSILPAAGETVEGRGEEKPSPFHQGQRSRPILPKPPKSGLTINHETNKGMLSQPRIARPPAEARCKNQLLPRYWPRITDKELEQLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLHIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVIFSRIDPGGKLVLGFRKASNSVDAQDASPSAPSNGIPMKDTSCSGVTEKLHLENGYPVLLLSMKGNREACSNGLSEHLHLNRMDAGLPKSENCGSMTNNDSLRQPITVSEKKRTRNIGSKSKRLLIHSEDALELRLTWEEAQDLLRPPXSVKPSIVTIEDHVFEEYDEPPVFGKRTFFTTHSSGRQDQWAQCDDCCKWRRLPVDVLLPPKWTCSENEWDDSRSLCSAPEELSPKELENLLRTSKGSKKRRIEEDRKSPQEHETSGLDALASVAVLGDNFLSPAESSAGITTKHPRHRPGCTCIVCIQPPSGKGRHKPTCICNVCMTVKRRFKTLMMRKKKRQSEREADATEKEAGHQRDASEMNGASRDDTICLEKGGDLVTGQTDVSEPSTGQIDLNCHPKREEILVDETELSMTSHLETTNYLQ 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3809g00002 835 SUPERFAMILY DNA-binding pseudobarrel domain 325 427 IPR015300 -
Pral3809g00002 835 Gene3D - 595 650 - -
Pral3809g00002 835 FunFam B3 domain-containing transcription repressor VAL1 305 432 - -
Pral3809g00002 835 Pfam B3 DNA binding domain 327 427 IPR003340 GO:0003677
Pral3809g00002 835 MobiDBLite consensus disorder prediction 226 292 - -
Pral3809g00002 835 MobiDBLite consensus disorder prediction 432 451 - -
Pral3809g00002 835 MobiDBLite consensus disorder prediction 432 450 - -
Pral3809g00002 835 Gene3D - 305 432 IPR015300 -
Pral3809g00002 835 MobiDBLite consensus disorder prediction 746 784 - -
Pral3809g00002 835 ProSiteProfiles B3 DNA-binding domain profile. 327 428 IPR003340 GO:0003677
Pral3809g00002 835 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 830 - -
Pral3809g00002 835 ProSiteProfiles Zinc finger CW-type profile. 592 642 IPR011124 GO:0008270
Pral3809g00002 835 MobiDBLite consensus disorder prediction 648 671 - -
Pral3809g00002 835 SMART B3_2 327 428 IPR003340 GO:0003677
Pral3809g00002 835 MobiDBLite consensus disorder prediction 648 676 - -
Pral3809g00002 835 CDD B3_DNA 325 426 IPR003340 GO:0003677
Pral3809g00002 835 MobiDBLite consensus disorder prediction 748 774 - -
Pral3809g00002 835 Pfam CW-type Zinc Finger 597 639 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3809g00002 Pral-Chr3809 73867 86274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3809g00002 1 814 B3 DNA Binding Superfamily AT2G30470 50.000 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral3809g00002 B3 1.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3809g00002 K09287 - gmx:100789848 1147.5