Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3809g00001 ATGGCATCAGGTAACCGATGCCACTATGAAGTCCTTGGCCTTGAGCGAGACTGTACTCCTGATGAAATACGATCAGCATATAGGCGTCTTGCCCTTCAACGGCACCCTGACAAGCTTGTCAAATCCGGCTTACCACAAGCTGAAGCCACAGCTCAGTTCCAGGAGCTCCAACATGCCTATGAAGTCCTTTCTGACCCTAAAGAGCGAGCATGGTATGATTCCCATCGGTCTCAGATTCTCTTTTCTGATCCCAACTCAGGGGGAAAGTCAGTGCCCAACTCATTCATCCCGAACCTGTTTTCCTTCTTCTCTACAAATGTTTATTCTGGATATTCAGACACTGGCAAGGGATTCTACAAGGTTTATTCTGATGTTTTTGTTCAAATTCATGCCAATGAAATTAACTTTGCTAAGAAATTAGGACTAGGTATAGATGTGGTTCGACAATCCCCAGTAATGGGCAATTTAGATAGCCCTTATGCTCAAGTGACAGCATTTTACAATTACTGGTTGGGATTTTCAACAATTATGGATTTTTGTTGGGTGGATGAGTATGATGTTATGGCTGGTCCTAACCGGAAGTCAAGGCGTCTTATGGAGGAAGAGAACAGCAAGATCAGAAAGAAAGCAAAGAAAGAGTACAATGACACAGTGCGGAAGTTGGCTGAATTTGTCAAGAAGAGGGATAAAAGGGTGATTGATATGAAGGTGAAGAAGAATATGGAGATGGAAAAGAAGAAAGAGGAGGAGAGGGAGAGGAAGAGGCAGTTGGAGAAGGAGAAAAAAGAGAGAGCAATGTCATATGAAGAGCCTGAGTGGGCCAAAGTGGAGGAGGATGAAGAAGATGAGCCTGATTGGTTTGAGGAGGGAAGTAAGAAGAAGAATGATGAGAATGAGTTTTATTGTGTACTGTGTGGTAAGAAGTTCAAGAGTGAGAAGCAATGGAAGAACCATGAGCAATCAAAGAAACACAAGGAGAAAGTTGCAGAATTTAGGGATTCACTTGATGATGAAGAGAATGTGGAAGTAGAGGTAGAAGAAGTGGAGGTAGATGAAAGAGAAGGAAAGGGGAGCTCAGACAGTTATGAAGACAAAGTTGGGTTGAATGATATGTCTGGGAGCACTCATAATGAGATTCAGGATTTAGAAGGGAAGATTAGAGATGGTCTTAATGTTGCAGAGGATGCGGCAGGAAATGGGATTGAGTTGAATGAAGAAGAAGAGGAAGAAGAATTTCTTGATGCCCAGCATTCTGAAGGGGAGGAGGCTGGCATCTCGGAGGATTTTGATGGAAAAGAATGTGACGATGAATTGGGTGTCCTTGAAGCAATGGTGGCTGGGCACGGGAGCAGAAAAACTGGTGCCCCAAGCCAGGAGCGCAAGGCTACATTGAGTATATCTCAAAATGATACTGAGAGCGATGAGGTTGGTTTTATGGAATATGACACACGAAAGAATTCAAGAAAGAAACGTGGCTCTAAAAAAGAGGGAGGAAGAAAAAATAGTGAAGAATCGATGGTGGCTACCAGTAACAATGATTTTCAGAATGAAAAATATATTAATGGTGATGCATATCAGGCAGAAGACTCTACTAATGGGGAAAACGAGAATAATGGTGGAGAAAATGAGCAGGCGAGTAGAGATAAGAAGACTTCACATCAACGTATTGATAAAAAAGGAGCTGCAAAGGATACAAGAACCAATGAAAAAAATTTCTCCAAAGCAAGAAAAGCCAGGGGGACATCAAAGAATCTTGGCAATATCTGTGACGCTTGCGGAGAGGAGTTTGATTCAAGGAATAAACTGCATAAGCATCTGGGAGAAACCGGGCATGCGACTATAAAATCCACAAGGAAGCGTCACTAG 1866 0.4266 MASGNRCHYEVLGLERDCTPDEIRSAYRRLALQRHPDKLVKSGLPQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSGGKSVPNSFIPNLFSFFSTNVYSGYSDTGKGFYKVYSDVFVQIHANEINFAKKLGLGIDVVRQSPVMGNLDSPYAQVTAFYNYWLGFSTIMDFCWVDEYDVMAGPNRKSRRLMEEENSKIRKKAKKEYNDTVRKLAEFVKKRDKRVIDMKVKKNMEMEKKKEEERERKRQLEKEKKERAMSYEEPEWAKVEEDEEDEPDWFEEGSKKKNDENEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLDDEENVEVEVEEVEVDEREGKGSSDSYEDKVGLNDMSGSTHNEIQDLEGKIRDGLNVAEDAAGNGIELNEEEEEEEFLDAQHSEGEEAGISEDFDGKECDDELGVLEAMVAGHGSRKTGAPSQERKATLSISQNDTESDEVGFMEYDTRKNSRKKRGSKKEGGRKNSEESMVATSNNDFQNEKYINGDAYQAEDSTNGENENNGGENEQASRDKKTSHQRIDKKGAAKDTRTNEKNFSKARKARGTSKNLGNICDACGEEFDSRNKLHKHLGETGHATIKSTRKRH 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3809g00001 621 MobiDBLite consensus disorder prediction 315 334 - -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 401 433 - -
Pral3809g00001 621 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Pral3809g00001 621 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Pral3809g00001 621 Pfam DnaJ domain 8 73 IPR001623 -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 541 576 - -
Pral3809g00001 621 SUPERFAMILY Chaperone J-domain 4 105 IPR036869 -
Pral3809g00001 621 SMART c2h2final6 300 324 IPR013087 -
Pral3809g00001 621 SMART c2h2final6 587 611 IPR013087 -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 242 272 - -
Pral3809g00001 621 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Pral3809g00001 621 ProSitePatterns Zinc finger C2H2 type domain signature. 589 611 IPR013087 -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 503 540 - -
Pral3809g00001 621 SMART dnaj_3 6 68 IPR001623 -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 401 416 - -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 335 349 - -
Pral3809g00001 621 PRINTS DnaJ domain signature 27 42 IPR001623 -
Pral3809g00001 621 PRINTS DnaJ domain signature 48 68 IPR001623 -
Pral3809g00001 621 PRINTS DnaJ domain signature 9 27 IPR001623 -
Pral3809g00001 621 Coils Coil 233 267 - -
Pral3809g00001 621 Coils Coil 403 423 - -
Pral3809g00001 621 Gene3D Classic Zinc Finger 288 353 - -
Pral3809g00001 621 ProSiteProfiles Zinc finger C2H2 type domain profile. 587 616 IPR013087 -
Pral3809g00001 621 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 616 IPR044648 -
Pral3809g00001 621 SUPERFAMILY beta-beta-alpha zinc fingers 293 339 IPR036236 -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 242 291 - -
Pral3809g00001 621 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Pral3809g00001 621 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 456 474 - -
Pral3809g00001 621 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Pral3809g00001 621 CDD DnaJ 7 65 IPR001623 -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 445 587 - -
Pral3809g00001 621 Gene3D DnaJ domain 1 88 IPR036869 -
Pral3809g00001 621 MobiDBLite consensus disorder prediction 315 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3809g00001 Pral-Chr3809 54490 57911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3809g00001 3 616 C2H2 Transcription Factor Family AT1G74250 50.000 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3809g00001 DnaJ 5.5e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3809g00001 K09506 - gmx:100788305 716.457