Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3808g00013 ATGGCCAGAGTTTCCACATCTTTATCTCCCAAACGTGGGGAATGGGTGAAGGGGAAATTGGTAGGATCAGGATCTTTCGGGACTGTTCATTTAGCCATGAGCAAATCCACAGGAGGACTCTTTGTTGTTAAATCAGCACATACAAGGGCTGAATTAGCAGCTTTGGAGAATGAGGTTGAAATTCTCAAGAATCTAGAGCCATCTCCTTATATAGTCCAATACTTGGGGTCAGAAAGACACGGAGATGATCTCAATGTTCTAATGGAGTACATGGCTGGGGGTAGCTTGGCTGATATTGCAGAGAAATTTGGTGGATCATTACAAGAAGATGTGATTCGTTTGTATACAAAAGAAATCCTTAAAGGCCTCAAGTATCTTCATGGTAATGGGATTGTGCATTGTGACCTTAAGTGCAAAAACGTGCTTCTGGGGTCTTCTGGGGACATCAAATTGGCAGATTTTGGATGTGCAAGGAGGGTGGAGGACTTGAAAAATAGAAGTTTGATGAAGAAGAATACCAAGTCTTTGGAATATGTTAGTGGGACCCCTCTCTGGATGGCTCCTGAAGTTTTGAGGAATGAAGAGCTTGATTTTTCTGCAGATATATGGTCTTTGGGATGCACAGTTATTGAAATGGCTACTGGTAGGCCCCCCTGGGGTGCTTCTAAGCATGATTCAGACCCAATGGCTGTCCTTTTGAAGATTGCCTGTGGTGATGAGATACCTAAACTCCCAACCCATTGCACAAAGGAGGGTCTGGATTTCTTGAGGAGGTGTTTGGACAGAGACTCAAGAAAAAGGTGGACATGTGAGGAATTGCTTAGGCACCCATTTGTATCAAGGGATTCATCTGTAACAACACCACCATCTTCACCCAAAGACGCTGCTTACTCACCAGTCAGTGTGTTGGGGATCTCAAGTTTTGATGATGCTTATGATTTGGATGAACCAGAAAGTCCAGAGGGAAATGATCTCCCAGTCATAAAGCCATTTACACTTTGTAAGGATGGAAGAACAATGCCAAGGCATGGAGATGAATGTGCATTATGTTCATCACAGAATTGGATTACTGTCAGATCATGA 1083 0.4331 MARVSTSLSPKRGEWVKGKLVGSGSFGTVHLAMSKSTGGLFVVKSAHTRAELAALENEVEILKNLEPSPYIVQYLGSERHGDDLNVLMEYMAGGSLADIAEKFGGSLQEDVIRLYTKEILKGLKYLHGNGIVHCDLKCKNVLLGSSGDIKLADFGCARRVEDLKNRSLMKKNTKSLEYVSGTPLWMAPEVLRNEELDFSADIWSLGCTVIEMATGRPPWGASKHDSDPMAVLLKIACGDEIPKLPTHCTKEGLDFLRRCLDRDSRKRWTCEELLRHPFVSRDSSVTTPPSSPKDAAYSPVSVLGISSFDDAYDLDEPESPEGNDLPVIKPFTLCKDGRTMPRHGDECALCSSQNWITVRS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3808g00013 360 SUPERFAMILY Protein kinase-like (PK-like) 13 318 IPR011009 -
Pral3808g00013 360 Coils Coil 45 65 - -
Pral3808g00013 360 CDD STKc_MAPKKK 14 279 - -
Pral3808g00013 360 ProSiteProfiles Protein kinase domain profile. 15 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3808g00013 360 SMART serkin_6 15 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3808g00013 360 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 14 292 - -
Pral3808g00013 360 Gene3D Transferase(Phosphotransferase) domain 1 3 282 - -
Pral3808g00013 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Pral3808g00013 360 Pfam Protein kinase domain 17 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3808g00013 360 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3808g00013 Pral-Chr3808 105897 106979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3808g00013 4 303 MAP Kinase Kinase Kinase AT5G55090 45.574 4.05e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pral3808g00013 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3808g00013 K20716 - pcin:129306931 636.721