Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3808g00005 ATGGGTTGTATGTGCTCGAAACCGAAATCTTCAAATGATTACGTTGCTGAGAACCTGGCCAGAGACAAGGATACGAAGGCAAATAGAATCTCAAAACATTTGACTTTGGGAGAGAAGGTCGCAATAGAGGCTGATGGTAGTGGTAATGATGCGACTACACGGTTGATATCTAATCCGTCTCGGGATGGAACTTCAGGGTCCGCTTCCGTGTCATCAGATGAGGGGGAGAAGAGCGGAGAACCAGAAACTACCGCAAAGCCGGCAAAACAGCTGGTTCATATGGCCTCAAACATGGGAATTGGAAATGGAGGACAAGGACAACCTAAGATGGCTAGGATAGTTACCGTACCTAAAGGGGAAAGAGGAGCTCAAGTTCTTGCTGGCTGGCCTTCTTGGCTTACTGCAGTTGCAGGGGAAGCCATTAATGGTTGGATACCTCGCAGAGCAGACTCATATGAGAAGTTGGAGAAGATTGGGCAAGGAACTTACAGCAGTGTTTACCGAGCTCGTGATCTAGAAACAAACAAAATTGTTGCGTTGAAGAAGGTTCGATTTGCTAATATGGATCCAGAAAGTGTTCGTTTTATGGCAAGAGAAATCATTGTACTGCGAAGGCTTGATCATCCAAATGTCATGAAACTTGACGGCATCATTACTTCACGGGTCTCCGGTAGCTTGTATCTTGTTTTCGAATATATGGAGCATGATCTTGCGGGGCTTGCAGCAACACCTGGCATCAAGTTCACTGAAGGGCAGATCAAATGTTATATGCAACAGTTGCTTCGTGGTATTGAGCATTGCCACAGTCATGGTGTTCTACATCGAGACATCAAGGGCTCAAATCTTCTGATTGACAAGAATGGCAATCTAAAGATTGGTGATTTTGGGCTAGCAACTTTCTTTGAGCCTTCTAAGGCTCAGGTTTTGACAAGTCGTGTGGTAACCTTGTGGTACCGACCACCTGAACTCCTACTGGGAGCCACAAATTATGGAGTTGCAGTGGACTTGTGGAGTGCTGGTTGCATTCTTGCGGAGTTGTTTGCTGGAAAGCCTATAATGCCTGGACGAACAGAGGTGGAGCAACTTCACAAAATCTTTAAACTCTGTGGATCACCATCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCAACAATTTTCAAACCTCAACATCCCTACAAACGTGTTGTTGCTGAGACATTTAAGGATTTTCCTCCATCAGCATTAAGCCTTTTGGAAGTCCTCCTTGCTATTGAACCTGACGATCGAGGAACTGCTTCTTTAGCACTTCACACGAGCGAGTTCTTTACCACAAAGCCTCTTCCATGTGATCCTTCTACTTTGCCAAGATATCCACCAAGCAAGGAGTTTGATGTCAAGTTTCGACAAGAAGAAGCCAGAAGACGAAGAGCTGCAAATAATAAAGGAAATGCAGAGGAATTCTCTAGCAAGGTTTCCAAAGATTCTAAAGCTGTTCCAGCACCTGATGCTAAGGCTGAGTTACGGTCATCAATTGAGAAAAGACAAGGACAAGCTAACCCTAAATGTATTAGCGAGAAGTTCAATCCTGATGAGGATGGTGGTTCTGGCTTCCCTATTGAACCTTCAAAGACACGAGCACTCAATGCCTTCTCTCATTCTGGTCAGTCAATGCATCCAAGTGTGTATGGATCTTCACGTAATATGAATTTAAACAAGGAAGAGTCTATTGCTGGCCCTGGCCGTGTGTATAATTCAGGAAATCCTGCAGAATTAAGAAAACAAAGATCCTACATGAACAGGAATGCTGCTCAATTGTCGAGGTTTTCTAATTCAGTTGCCAATGGAGGTGGTTTAAAGCTTGATATGAGTGGAGATGCTAGTTCACAGTGGCCTGATGATTGCTTTGGCACACGATATGACCATCTTGTTGATGACGAATCCAACCAATTGCTCAAGTCTATGCACAAGAAGGAAATGCATCCTTGCGCAAAGGAGTCTTCCAAGGCCTTTGCCCCAAAAAATGGTCAAATGTACTATTCAGGGCCTCTAGTCCCTGGAGGTGAAAATCTCGATGAAATGCTTAAGGAGCATGAAAGGCAAATCCTACAAGCTGTCCGCAAGGCACGGTCAGATAAGGTCAAGATCAGTAAATGCTGCAATGACACTGGCCAAACTGAATCCCTACTTCACCATGTGGGAAATCGCTAG 2193 0.4455 MGCMCSKPKSSNDYVAENLARDKDTKANRISKHLTLGEKVAIEADGSGNDATTRLISNPSRDGTSGSASVSSDEGEKSGEPETTAKPAKQLVHMASNMGIGNGGQGQPKMARIVTVPKGERGAQVLAGWPSWLTAVAGEAINGWIPRRADSYEKLEKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPESVRFMAREIIVLRRLDHPNVMKLDGIITSRVSGSLYLVFEYMEHDLAGLAATPGIKFTEGQIKCYMQQLLRGIEHCHSHGVLHRDIKGSNLLIDKNGNLKIGDFGLATFFEPSKAQVLTSRVVTLWYRPPELLLGATNYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRVVAETFKDFPPSALSLLEVLLAIEPDDRGTASLALHTSEFFTTKPLPCDPSTLPRYPPSKEFDVKFRQEEARRRRAANNKGNAEEFSSKVSKDSKAVPAPDAKAELRSSIEKRQGQANPKCISEKFNPDEDGGSGFPIEPSKTRALNAFSHSGQSMHPSVYGSSRNMNLNKEESIAGPGRVYNSGNPAELRKQRSYMNRNAAQLSRFSNSVANGGGLKLDMSGDASSQWPDDCFGTRYDHLVDDESNQLLKSMHKKEMHPCAKESSKAFAPKNGQMYYSGPLVPGGENLDEMLKEHERQILQAVRKARSDKVKISKCCNDTGQTESLLHHVGNR 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3808g00005 730 FunFam probable serine/threonine-protein kinase At1g54610 139 234 - -
Pral3808g00005 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Pral3808g00005 730 CDD STKc_CDK9_like 152 437 - -
Pral3808g00005 730 Pfam Protein kinase domain 152 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3808g00005 730 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Pral3808g00005 730 Gene3D Transferase(Phosphotransferase) domain 1 240 477 - -
Pral3808g00005 730 MobiDBLite consensus disorder prediction 50 74 - -
Pral3808g00005 730 FunFam probable serine/threonine-protein kinase At1g54610 235 477 - -
Pral3808g00005 730 Gene3D Phosphorylase Kinase; domain 1 147 239 - -
Pral3808g00005 730 PANTHER CELL DIVISION PROTEIN KINASE 150 443 - -
Pral3808g00005 730 SMART serkin_6 152 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3808g00005 730 MobiDBLite consensus disorder prediction 466 506 - -
Pral3808g00005 730 SUPERFAMILY Protein kinase-like (PK-like) 145 439 IPR011009 -
Pral3808g00005 730 MobiDBLite consensus disorder prediction 42 88 - -
Pral3808g00005 730 ProSiteProfiles Protein kinase domain profile. 152 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3808g00005 730 Coils Coil 682 702 - -
Pral3808g00005 730 MobiDBLite consensus disorder prediction 466 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3808g00005 Pral-Chr3808 6344 12705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3808g00005 144 473 Core Cell Cycle Gene Families AT5G10270 51.884 1.47e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pral3808g00005 Pkinase 8.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3808g00005 - - qsa:O6P43_031464 995.727