Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3804g00018 ATGGCAATTGTAGCAACCTCATCCTCATCTCCCACCATGAGCCTCAGCCACGACGATACCACCACAACCGCCGCCACCGATGGCTGCGACACGCTCAAACGCCCCGACGAGGACGATGACGACAACCACCAGCACGACATGGTCATGCCCGGCTTCCGCTTCCACCCAACCGAAGAAGAACTTGTTGAATTCTACCTTCGCCGGAAAGTCGAAGGCAAGCGTTTCAACATCGAGCTCATCACCTTCCTCGATCTCTATCGCTACGATCCATGGGAACTCCCTGCTATGGCGGCGATCGGAGAGAAGGAGTGGTACTTCTACGTTCCGAGGGATAGGAAGTATCGGAACGGTGACCGGCCGAACAGAGTGACGACGTCTGGGTACTGGAAGGCGACCGGAGCTGATAGAATGATTCGAGCGGCGGAGAGTTCGAGGTCAATCGGGCTGAAGAAAACTCTAGTTTTCTATTCTGGAAAAGCTCCAAAAGGGATTCGAACCAGTTGGATTATGAATGAGTATCGTTTGCCTCACCATGAAACCCAGCGCTTCCAGAAGGCTGAGATATCTCTGTGTCGAGTTTACAAGAGACCTGGTGTAGAAGACCATCCCTCTCTTCCTCGCAGTCTCCCTACCAGACCCTCCTCATCATCCACTACATCAAAACCTTCTTCAGACAAGAATCATTATAATAATAATAGTAAGCACAACATCAACCTTGCCCCAGATATGTTTCATCATCAAAACATGGGATTTCTGGAACAGCCTCAGACTCATCATCATCGAGATCAGCAAATTACCAACGAAACTGATCAGGGAAGCAGTAGTAGTACTGCTGCTACAACTACCACCACCACCACCAGTAACAACAACAATAATTCGATATTAATGATGGATGATTTCAATAGGCTAGTGACTTACAATAATAACCAACAATATTTACAATACTATAACAGTGGTATTATGAATCCTTCTCCTTCTGAAAATCATCATCATCTTCAGTTCTCTAATCTGCTATTGCAGCAGCAGCCACAAGTTCAGCAACCAACGGTGGCTCTGAATAGTTCGGTTCCGATTACTTCTTTTTCTGACAGATTGTGGGAGTGGAATCCATTAATCCCTGAAGCTACAAACCGAGAGTTCAGCAACATGTCCTTCAAGTAA 1161 0.4703 MAIVATSSSSPTMSLSHDDTTTTAATDGCDTLKRPDEDDDDNHQHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNIELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRAAESSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETQRFQKAEISLCRVYKRPGVEDHPSLPRSLPTRPSSSSTTSKPSSDKNHYNNNSKHNINLAPDMFHHQNMGFLEQPQTHHHRDQQITNETDQGSSSSTAATTTTTTTSNNNNNSILMMDDFNRLVTYNNNQQYLQYYNSGIMNPSPSENHHHLQFSNLLLQQQPQVQQPTVALNSSVPITSFSDRLWEWNPLIPEATNREFSNMSFK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3804g00018 386 FunFam NAC domain-containing protein 35 57 199 - -
Pral3804g00018 386 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 46 283 - -
Pral3804g00018 386 MobiDBLite consensus disorder prediction 208 238 - -
Pral3804g00018 386 MobiDBLite consensus disorder prediction 199 238 - -
Pral3804g00018 386 MobiDBLite consensus disorder prediction 1 44 - -
Pral3804g00018 386 MobiDBLite consensus disorder prediction 30 44 - -
Pral3804g00018 386 SUPERFAMILY NAC domain 48 196 IPR036093 GO:0003677|GO:0006355
Pral3804g00018 386 Gene3D NAC domain 57 199 IPR036093 GO:0003677|GO:0006355
Pral3804g00018 386 MobiDBLite consensus disorder prediction 255 293 - -
Pral3804g00018 386 MobiDBLite consensus disorder prediction 1 28 - -
Pral3804g00018 386 MobiDBLite consensus disorder prediction 267 293 - -
Pral3804g00018 386 Pfam No apical meristem (NAM) protein 50 175 IPR003441 GO:0003677|GO:0006355
Pral3804g00018 386 ProSiteProfiles NAC domain profile. 48 196 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3804g00018 Pral-Chr3804 155563 159258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3804g00018 47 386 NAC Transcription Factor Family AT2G02450 53.406 1.10e-119 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral3804g00018 NAM 3.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3804g00018 - - pcin:129305223 568.155