Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3804g00003 ATGTCAGAAATGCGGGTTTCTGATCTCCACTTGAAGAAGGAGCTCACTCAAATTCGCAAAGCTGCTCGTGTTTTGAGGGATCCTGGTACTACTTCTTCGTGGAAGTCGCCACTTAGTTCGTCGAGATCTGCTGCGGCTGCTTCCGCTTCTGCTTCTGCATGGAAGAACAATGGCAACTCACAACTTCATTCTCAGTTGTCTCTTCCGAGTGGGAGCAACAATGGGAAGGACAAGATGGTGTTCTTGTACAATTGGAAGAATTACAAATCGTCAAGTGAGAAACACAATGGCGATGATAAAGTCGAAGAAGAAGAAGAGTATGACGAAGATGGTGGTGGAAACGATGGATCTTCGTCTCTTCTGTGTAGTTTCGAGGATAGCCTCAGTGATGCTCGCAATGGTTGCGATTCCAAGAGCGACACTTGCTTAGGGGTTGGCGGGAGTGGGATTCGTTCTTCCATTTTCAGGTGTAAAGATGCGAATCCTATCGCGTTGGGCACGCCATCGACCAGAAGAGCACTGGAGATTAAGAAAAAGAGTAAGAAAAGCAAAAATGCCCATTTGGATATTCAAAGAAAATATCAGCAAAGAGAAACCAATCTTGGCAAAGCTTTTGTGAATCGCAAGCATCGTACTCATCGGTCAATAGGTTATAGCCGGGAGGACTCAGTTGGGCAGTCTGATGATACTGAAGATTACTGCAACTATGAAGATTTAACACGAAACGCAGGGCCGTCTCCTTTGCTTTTGAAGCTCAAGCATAAGAATTGGTCTCGCCCTAACTCTAATTTATTGAAAAGTAATAGAAAAGAGGATTCTTCTTATAGTACTCCTGCAATGTCTACCAGTTCTTATAATAGGTTTGGTCAACATAATCCTAGTACTGTTGGATCCTGGGATGGTACGACAACCTCGGTAAACGATGCTGATGATGAAGTAGATGATCTTTTGGATTTGCCTGGTCGTCAAGGATGCGGTATTCCTTGCTATTGGTCAAAGAAGACTCCAAAACATAGAGATATGTGTAGGAGTTGCTATTCACCTTCACTTTCGGACACTCTTAGGAGGAAAGGAAGTAGCATGCTTTGTGGAAGTCAAACTATCTATCCTAGACACCGAAGATCCTTGTCAAGCTCTCACAAGCGGAGAATTTCCTCAAGGAGCGCTCAAGGTGTTCTCCCATTGCTCACTAACAGTGATGATGTTAGAGGGTCATCTCTTGCAACTGGCATAAGTGATGATGAACTTTCTACAAACTATGGGGAGCTTGATCTTGAGGGCATAAGCAGGTTGGATGGAAGAAGGTGGTCCACAAGTTGTAGGAGTCAAGAAGGATGGGAGATTGTAGCTTTCAATGGAGAAGGGGATGGTGATGGCACTCCAGAAAGTAGTAGAAGTTACAGTCAAAAGTATAAGCCTGTGTTCTTTAGTGAATTGATTGGGCAGAATATTGTGGTCCAATCACTTAGGAATGCAGTTTCAAGAGGTCGAATTGCTCCTGTTTATCTTTTCCAGGGTCCACGTGGGACTGGTAAAACATCAACGGCCAGGGTTTTTGCTGGTGCATTGAATTGTATTGCTCCTGATGAAACTAAACCTTGCGGCTACTGCAGGGAATGTGCAAATTTCATTTCTGGAAAGAGCAGGGACCTTTTGGAAGTTGATGGAAGCAATAGAAAGGGGATTGATAGAGTTAGACATCTATTGAAAAGATTATCAGTTAGGTCTTGTTCAGCCTCCTCACGATACACGGTCTTTGTTATTGATGAGTGTCATTTGTTACCCTCTAAGACATGGTTGGCATTTCTTAAATATCTGGAAGATCTACCTCAGCGAGTTGTGTTCATATTTATAACAACGGATCTTGACAATGTACCCCGAACAATACAATCTAGATGCCAGAAGTACCTTTTTAACAAAATTAAAGATGCAGATATAGTAGCACGGCTGAGAAAAATATCTGCTGAGGAGAACCTGGATGTTGAAACAGATGCGTTGGATCTTATTGCTACGAATGCAGACGGTTCACTTTGGGATGCAGAAACTATGTTAGAACAGTTGAGCTTGCTGGGAAAAAGAATTACTGCTAGTCTTGTCAACGAACTAATGGGGGTTGTTTCAGATGAAAAATTACTAGAACTATTGGAGTTAGCAATGTCATCAGACACTGCAGAAACAGTGAAAAGGGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATTGTTTTGATGTCCCAACTGGCAAGCCTCATTATGGACATCATTGCGGGATCATATACAGTCATAGATGACAAACCTGGTGATTCATTTTTTGGCGGACGAAGTTTGAACGAATCAGAGTTGGAGAGATTAAAGCATGCTTTGAAGCTTCTCTCGGAGGCTGAGAAGCAGTTAAGGACTTCTAGTGAACGCTCGACATGGTTCACAGCTACTCTGCTACAGCTTGGTTCAATGCCTTCGCCAGATATTACTCAGACCACCAGCAGCAGGAGGCAGAGCAGCAAGACAACTGACGATGATCCATCAAGTGCTTCAAGAGAAGTAACTGCTCACAAGAACAAATCAGATGTTCAGTGTATGCCTCAGAAATCAACATCGCCTGCATCTCTGCAGAAAGCTGTAAATAGCGATCCCAGCCACCAAAGGCAGTTATCATCAAAGTTCGATGGTTTCAGCTTGAATTCGAAGCCGTCAAATAGTCCAGTCATAGATGATGACACCGCACCAGTTTCATTTGATGATCATAGAGTTAGTAATGTTACATTTAGATGCATAGATTCGGGGAAGTTACGTGATATCTGGGCACGTTGTATTGGAAGGTGTCACTCAAAGACATTGCAGCAGCTGCTACATAATCATGGAAAACTTGTATCCATGTGTGAAGTTGAAGGCCTGCTGGTTGCATATGTTGCATTTGGGGATGCAGATATTAAACTTAGGGCTGAAAGGTTTTTGAGCAGCATAACAAATTCCATGGAAATGGTTTTGAGACGAAATGTAGAGGTCAGAATTATCCACTTGCTTGATGGTGGAGGTGAAAATCAGATCAATCTATCTGGCTCAAAACAGGCAGAATCAATAATAGCAAATGAGAAGGAGCATAGAGAAGGTCATACAAGAGGAAGAGACACTTTTTCGGATTTACCTCCTTTGCTGGATGGAAACTTTCAATCTACCAATGATTCGTCAGATTTACTGGTTGATGGAAATGGTGCAAGAGAGAGATCAGATATTCCAATGCAAAGGATTGAATCCATTATTCGTGAGCAGAGGCTGGAAACTGCTTGGTTACAAGCTGTAGGAAAAGGCTCCCCAGGATCATTAAGTCGCTTGAGACCTGAAAAGAATCAGGTCCTGCCTCAGGAAGGTATCTACTGTAAAGACCCAACTGAGTCTATGGACTCAATGAGGTTTTCCTCTCAGCATAGGGAAGATGACATCAGTCATGAAGTCAAAGTTTTGAAAGCTAAAACTGGAAGGGTCCTTCAAAAGGATCAGATTGGAATTGGAAGAAGGGCTGACTGTTACTCCATGTCCCCTAGTTTATTGCATGATGGCAGTTTAGTGACAACTTCCATCAAAGACAGTCTGGGATATGAATCAGGCCCAGGAGCAAGAGGTTGTAGTGGATTTTTGTGTTGGAACAACTCCAGCCGTCGAAGGGTAAAGCAGGTAAAAGGTACCCCAGTGCGGAAAGTGGGGCGCTTTTCAATGTTTGGTGAGTGTGGTAAGTCAAAGAGAAAGAGTTGA 3750 0.4309 MSEMRVSDLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSAAAASASASAWKNNGNSQLHSQLSLPSGSNNGKDKMVFLYNWKNYKSSSEKHNGDDKVEEEEEYDEDGGGNDGSSSLLCSFEDSLSDARNGCDSKSDTCLGVGGSGIRSSIFRCKDANPIALGTPSTRRALEIKKKSKKSKNAHLDIQRKYQQRETNLGKAFVNRKHRTHRSIGYSREDSVGQSDDTEDYCNYEDLTRNAGPSPLLLKLKHKNWSRPNSNLLKSNRKEDSSYSTPAMSTSSYNRFGQHNPSTVGSWDGTTTSVNDADDEVDDLLDLPGRQGCGIPCYWSKKTPKHRDMCRSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSLSSSHKRRISSRSAQGVLPLLTNSDDVRGSSLATGISDDELSTNYGELDLEGISRLDGRRWSTSCRSQEGWEIVAFNGEGDGDGTPESSRSYSQKYKPVFFSELIGQNIVVQSLRNAVSRGRIAPVYLFQGPRGTGKTSTARVFAGALNCIAPDETKPCGYCRECANFISGKSRDLLEVDGSNRKGIDRVRHLLKRLSVRSCSASSRYTVFVIDECHLLPSKTWLAFLKYLEDLPQRVVFIFITTDLDNVPRTIQSRCQKYLFNKIKDADIVARLRKISAEENLDVETDALDLIATNADGSLWDAETMLEQLSLLGKRITASLVNELMGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGSYTVIDDKPGDSFFGGRSLNESELERLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGSMPSPDITQTTSSRRQSSKTTDDDPSSASREVTAHKNKSDVQCMPQKSTSPASLQKAVNSDPSHQRQLSSKFDGFSLNSKPSNSPVIDDDTAPVSFDDHRVSNVTFRCIDSGKLRDIWARCIGRCHSKTLQQLLHNHGKLVSMCEVEGLLVAYVAFGDADIKLRAERFLSSITNSMEMVLRRNVEVRIIHLLDGGGENQINLSGSKQAESIIANEKEHREGHTRGRDTFSDLPPLLDGNFQSTNDSSDLLVDGNGARERSDIPMQRIESIIREQRLETAWLQAVGKGSPGSLSRLRPEKNQVLPQEGIYCKDPTESMDSMRFSSQHREDDISHEVKVLKAKTGRVLQKDQIGIGRRADCYSMSPSLLHDGSLVTTSIKDSLGYESGPGARGCSGFLCWNNSSRRRVKQVKGTPVRKVGRFSMFGECGKSKRKS 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3804g00003 1249 CDD AAA 480 638 - -
Pral3804g00003 1249 MobiDBLite consensus disorder prediction 259 303 - -
Pral3804g00003 1249 MobiDBLite consensus disorder prediction 91 116 - -
Pral3804g00003 1249 MobiDBLite consensus disorder prediction 22 71 - -
Pral3804g00003 1249 Pfam DNA polymerase III subunits gamma and tau domain III 694 760 IPR022754 GO:0003887
Pral3804g00003 1249 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 468 866 - -
Pral3804g00003 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 691 IPR027417 -
Pral3804g00003 1249 SUPERFAMILY post-AAA+ oligomerization domain-like 712 813 IPR008921 GO:0003677|GO:0006260
Pral3804g00003 1249 MobiDBLite consensus disorder prediction 855 902 - -
Pral3804g00003 1249 Pfam DNA polymerase III, delta subunit 481 641 - -
Pral3804g00003 1249 NCBIfam DNA polymerase III subunit gamma/tau 466 815 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pral3804g00003 1249 FunFam DNA polymerase III subunit gamma/tau 642 704 - -
Pral3804g00003 1249 MobiDBLite consensus disorder prediction 818 832 - -
Pral3804g00003 1249 CDD HLD_clamp_pol_III_gamma_tau 641 704 IPR045085 -
Pral3804g00003 1249 Gene3D - 458 639 IPR027417 -
Pral3804g00003 1249 MobiDBLite consensus disorder prediction 29 71 - -
Pral3804g00003 1249 FunFam DNA polymerase III subunit gamma/tau 462 640 - -
Pral3804g00003 1249 SMART AAA_5 498 660 IPR003593 GO:0016887
Pral3804g00003 1249 MobiDBLite consensus disorder prediction 833 853 - -
Pral3804g00003 1249 Coils Coil 777 804 - -
Pral3804g00003 1249 Gene3D - 642 704 - -
Pral3804g00003 1249 MobiDBLite consensus disorder prediction 818 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3804g00003 Pral-Chr3804 15678 23533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3804g00003 462 764 Core DNA Replication Machinery Family AT1G21690 24.679 2.06e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3804g00003 - - gmx:100814391 1660.2