Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3802g00002 ATGGAACTTTCCAGTGAAGAAGGAGAGATCCCAATCCCAATAAACAGTACCACTAGTTATGGAGGTGGCAATAATGGCCATGGCCACCTGATCCACCACCACCATAATCACGAGCCTGCAATCCACAGCCACATGATCCCTAATTCCTCAGTACTCCCAGTAGCATCAGCACCGCCCCATAACGGTGGCAGCGCCGGAGGAGGAGGAGGCGGTGCTGGCGGTGGCGGCATGGAGGAGGATCAACATGGGCCCTACAGCAAGAAACTAGTGGTGAAGTACAGAGAATGCTTGAAGAACCATGCAGCTTCCATGGGAGGAAATGCCACAGATGGTTGTGGAGAGTTCATGCCCAGTGGAGAAGAAGGAACGCTTGAAGCTCTCACTTGCTCAGCCTGCCATTGCCACAGAAACTTCCACAGAAAAGAAATTGAAGGCCATGATGAACAACAACATCAACATGATTATCATCATCATCACCATCATCAATATCTTCACCATCCTTATAGATTAGGTGGTAGGAAGCTTCTTCTTCCTCCTCCTGCTGCTGAAACCATGGCCTACCCTACACCTCCAGGTAACATCTTACCTTCTAGAATGATCATGCCCTACAATGTCATGGGGTCCCACTACTCATCCCTCCCTTCAGACTTATCTGATGACCAAGAAGATCATCCTCATCCTGATCCTCATCATGGGATGATGAAGCCACATCATCATCATCAGAATAAGAAGAGGTTCAGAACAAAGTTCACACAGGAGCAGAAAGAGAAGATGCTGAGCTTTGCTGAGAGAGTCGGATGGAAGATTCAGAAACAGGAAGAATCTGTGGTGCAACAGTTTTGTCAAGAGATTGGTGTGAAAAGAAGAGTGCTTAAGGTTTGGATGCACAACAATAAGCACAACCTCGCCAAAAAGATCAATCCCACAACTACAACTCCAACTCCAACTCCAACTGATCCTCCGACTACTACTACAACTTCACCACCTTAA 990 0.4737 MELSSEEGEIPIPINSTTSYGGGNNGHGHLIHHHHNHEPAIHSHMIPNSSVLPVASAPPHNGGSAGGGGGGAGGGGMEEDQHGPYSKKLVVKYRECLKNHAASMGGNATDGCGEFMPSGEEGTLEALTCSACHCHRNFHRKEIEGHDEQQHQHDYHHHHHHQYLHHPYRLGGRKLLLPPPAAETMAYPTPPGNILPSRMIMPYNVMGSHYSSLPSDLSDDQEDHPHPDPHHGMMKPHHHHQNKKRFRTKFTQEQKEKMLSFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKINPTTTTPTPTPTDPPTTTTTSPP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3802g00002 329 Gene3D - 231 304 - -
Pral3802g00002 329 MobiDBLite consensus disorder prediction 212 244 - -
Pral3802g00002 329 NCBIfam homeobox domain, ZF-HD class 243 299 IPR006455 -
Pral3802g00002 329 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 93 142 IPR006456 -
Pral3802g00002 329 MobiDBLite consensus disorder prediction 10 24 - -
Pral3802g00002 329 Pfam ZF-HD protein dimerisation region 91 143 IPR006456 -
Pral3802g00002 329 MobiDBLite consensus disorder prediction 302 329 - -
Pral3802g00002 329 MobiDBLite consensus disorder prediction 1 31 - -
Pral3802g00002 329 MobiDBLite consensus disorder prediction 216 230 - -
Pral3802g00002 329 SUPERFAMILY Homeodomain-like 232 304 IPR009057 -
Pral3802g00002 329 MobiDBLite consensus disorder prediction 313 329 - -
Pral3802g00002 329 FunFam Zinc-finger homeodomain protein 2 231 304 - -
Pral3802g00002 329 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 92 143 IPR006456 -
Pral3802g00002 329 MobiDBLite consensus disorder prediction 55 83 - -
Pral3802g00002 329 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 81 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3802g00002 Pral-Chr3802 38713 41102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3802g00002 1 307 ZF-HD Transcription Factor Family AT2G02540 48.889 2.74e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral3802g00002 ZF-HD_dimer 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3802g00002 - - pcin:129306662 417.157