Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3800g00019 ATGAGAAGGTGCAGAGAGATTCTTCGACTCTACTCTTCTCTTCGCTATGGAACTGCGAAATCACCATCTTCTCCTTTTGATTCGCCTGGGTTTATTATTCCTTTAAGCTATTCTTTCTCCTCAAATCCTGATGGCAATGACGACAAGAGGTCACCCAACTCTCAAAGGGATTCGTTGCTTCTAGAAAAATTTAGACTTAGAAAGCTCGAAGGTTCTTCTACAACTTCACAAGGTAGCCCCCAAGCATCGGAGAAGGAAATTGAAAAGGATTTGAAGAATGAGGATGAATCCTCTAATGTAGTGACCGATTTCAAGGTGCTGGGTTTGTGTAAGGAGCTCATTGAGTTTTTGGAGAAACTAGGGCTGCTTATTCCTACTGAGATTCAATGTGTGGGAATTCCTGCTGTCTTGAAAGGCAAGAGTGTTTTGATGAGTTCGGTGTCTGGGCCTGACAGAATTTTGGCCTACTTATTGCCTCTTATTCAGCTTTTGAGGCAAGACACAAAGTTGTCCCAATCAAAATTGCGGCATCCTCGGGCCATTGTTCTCTGTGCCACAGAGGAGAAAGCTGAACTGTGCTTTAATGCTGCAAAATTTATCATCCATCACACAGAATTGAAATCTGCTAAGGGTGATTTACCAAATAATGAGAAGTCAGATGCTTCAATTGGCCTTGTAATCGGACCTCCTTGTGAGATTCTTCAGTACATTGAAGAGGGAATGGTTATTCCTGAAGAAATAAGATATTTGGTCTTGGGTGAAGAGTCTCCTGTTATAAAGCGCCCGGAGAATAATCATGCAGGACATGTTTCCGCGATGTTGTTGGAAATGGATCGCGCAGAAGTCTTTCAACTGACAGAATCATTGGATGCTTTAAGGCAAAAAATGACAGAGGCCATGAATTTTCTCAAATGA 915 0.4208 MRRCREILRLYSSLRYGTAKSPSSPFDSPGFIIPLSYSFSSNPDGNDDKRSPNSQRDSLLLEKFRLRKLEGSSTTSQGSPQASEKEIEKDLKNEDESSNVVTDFKVLGLCKELIEFLEKLGLLIPTEIQCVGIPAVLKGKSVLMSSVSGPDRILAYLLPLIQLLRQDTKLSQSKLRHPRAIVLCATEEKAELCFNAAKFIIHHTELKSAKGDLPNNEKSDASIGLVIGPPCEILQYIEEGMVIPEEIRYLVLGEESPVIKRPENNHAGHVSAMLLEMDRAEVFQLTESLDALRQKMTEAMNFLK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3800g00019 304 SMART poly_2 244 304 IPR002004 GO:0003723
Pral3800g00019 304 MobiDBLite consensus disorder prediction 70 94 - -
Pral3800g00019 304 Pfam DEAD/DEAH box helicase 126 255 IPR011545 GO:0003676|GO:0005524
Pral3800g00019 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 254 IPR027417 -
Pral3800g00019 304 SUPERFAMILY PABC (PABP) domain 252 304 IPR036053 GO:0003723
Pral3800g00019 304 Pfam Poly-adenylate binding protein, unique domain 257 302 IPR002004 GO:0003723
Pral3800g00019 304 Gene3D - 66 301 IPR027417 -
Pral3800g00019 304 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 231 304 IPR002004 GO:0003723
Pral3800g00019 304 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 292 IPR014001 -
Pral3800g00019 304 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 49 254 - -
Pral3800g00019 304 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 102 130 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3800g00019 Pral-Chr3800 622811 626056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3800g00019 248 304 Eukaryotic Initiation Factors Gene Family AT1G22760 44.828 1.49e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3800g00019 - - gmx:100800575 270.396