Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3800g00018 ATGAGAAGGTGCAGAGAGATTCTTCGACTCTACTCTTCTCTTCGCTATGGAACTGCGAAATCACCATCTTCTCCTTTTGATTCGCCTGGGTTTATTATTCCTTTAAGCTATTCTTTCTCCTCAAATCCTGATGGCAATGACGACAAGAGGTCACCCAACTCTCAAAGGGATTCGTTGCTTCTAGAAAAATTTAGACTTAGAAAGCTCGAAGGTTCTTCTACAACTTCACAAGGTAGCCCCCAAGCATCGGAGAAGGAAATTGAAAAGGATTTGAAGAATGAGGATGAATCCTCTAATGTAGTGACCGATTTCAAGGTGCTGGGTTTGTGTAAGGAGCTCATTGAGTTTTTGGAGAAACTAGGGCTGCTTATTCCTACTGAGATTCAATGTGTGGGAATTCCTGCTGTCTTGAAAGGCAAGAGTGTTTTGATGAGTTCGGTGTCTGGGCCTGACAGAATTTTGGCCTACTTATTGCCTCTTATTCAGCTTTTGAGGCAAGACACAAAGTTGTCCCAATCAAAATTGCGGCATCCTCGGGCCATTGTTCTCTGTGCCACAGAGGAGAAAGCTGAACTGTGCTTTAATGCTGCAAAATTTATCATCCATCACACAGAATTGAAATCTGCTAAGGGTGATTTACCAAATAATGAGAAGTCAGATGCTTCAATTGGCCTTGTAATCGGACCTCCTTGTGAGATTCTTCAGTACATTGAAGAGGGAATGGTTATTCCTGAAGAAATAAGATATTTGGTAGTGGATGATGCCGACTGCATGTTTGATAGTGGCATCAGCCTTGATTTTTGCAAGATTCTCAGACACTTGCCAGATTATACTAAAGAATCCACTGCCAAAGGGTTGCAAACTGTTTTGGTTACTTCAACAATAACAGAGGTCTTGGGTGAAGAGTCTCCTGTTATAAAGCGCCCGGAGAATAATCATGCAGGACATGTTTCCGCGATGTTGTTGGAAATGGATCGCGCAGAAGTCTTTCAACTGACAGAATCATTGGATGCTTTAAGGCAAAAAATGACAGAGGCCATGAATTTTCTCAAATGA 1056 0.4195 MRRCREILRLYSSLRYGTAKSPSSPFDSPGFIIPLSYSFSSNPDGNDDKRSPNSQRDSLLLEKFRLRKLEGSSTTSQGSPQASEKEIEKDLKNEDESSNVVTDFKVLGLCKELIEFLEKLGLLIPTEIQCVGIPAVLKGKSVLMSSVSGPDRILAYLLPLIQLLRQDTKLSQSKLRHPRAIVLCATEEKAELCFNAAKFIIHHTELKSAKGDLPNNEKSDASIGLVIGPPCEILQYIEEGMVIPEEIRYLVVDDADCMFDSGISLDFCKILRHLPDYTKESTAKGLQTVLVTSTITEVLGEESPVIKRPENNHAGHVSAMLLEMDRAEVFQLTESLDALRQKMTEAMNFLK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3800g00018 351 MobiDBLite consensus disorder prediction 70 94 - -
Pral3800g00018 351 Pfam Poly-adenylate binding protein, unique domain 304 349 IPR002004 GO:0003723
Pral3800g00018 351 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 313 IPR014001 -
Pral3800g00018 351 Gene3D - 66 300 IPR027417 -
Pral3800g00018 351 Gene3D - 301 351 - -
Pral3800g00018 351 SUPERFAMILY PABC (PABP) domain 297 351 IPR036053 GO:0003723
Pral3800g00018 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 298 IPR027417 -
Pral3800g00018 351 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 278 351 IPR002004 GO:0003723
Pral3800g00018 351 SMART poly_2 291 351 IPR002004 GO:0003723
Pral3800g00018 351 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 49 297 - -
Pral3800g00018 351 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 102 130 IPR014014 GO:0003724
Pral3800g00018 351 Pfam DEAD/DEAH box helicase 126 296 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3800g00018 Pral-Chr3800 622811 626056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3800g00018 277 351 Eukaryotic Initiation Factors Gene Family AT2G23350 39.241 6.30e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3800g00018 - - vra:106768009 337.035