Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3790g00047 ATGGAGATATCGTTGTTAAATGTACTTGTTAATGTGATATCCTCGTTTTCGCACTTAAGATTTTCCAGAAACGTGAGCTCAGAACTTATGTTGAAGTATTACCAAAAGGAAGAGGAGATACTCAAGCTGTTAAAGCCAACACTTGAAGCCATCACTAATACTGATTTAGCCTCTGATGAAGTGCTTCTGAAGATATTTGAAGAACTGAACCAGGCTGTTCAGGAACTTAGGGAGCTTTTCGAGAGTTGGCAACTATTGTGTAGCAAATTTTACATTGTTCTACAAGTTGAATCCTTGATATCTAAGATTCAGATTATGGCACTCAACATATTCAACCAACTGAAAGCTTCCCATCAATGTCTCCCTAATGGATTAAGTTTTTCACACATAGAGCACTGTATTGAGAAAGTAAAGAATTTGGGACATGAAGAAACATCATTTATCATCAAGGAAGCTATCATGGAACAAGTGGAAGGCTTAGGTCCTAGCTCAGAGGTCCTTGAAAAGCTTGCTGAGAATTTGGGCCTGAGCTCTAATCAAGAGATTCTAATTGAGGCTTTGACACTTGAAAAGTTGAAGGAAAATGCAGAACAGATTGAAAATACTACAGAAGCTGAATATCTACGCCAGATAATTACTCTTGTAACTTACATGCATGAGAGACTTATAATGCTCAAGGAAGCCCAGATCTCTAGCCAAGTTCCAGTACCTGCAGATTTTTGCTGTCCTCTCTCTTTGGAAATGATGAAAGATCCTGTGATTGTGTCATCAGGGCAAACTTATGAGCGAGTTTTCATTAAGAAGTGGATTGATCTAGGGCTTAACGTTTGTCCGAATACACGTCAGACTTTGGTTCATACCAACCTAATACCAAATTATACTGTGAAGGCATTGATTTTAAACTGGTGTGAATTGAACAATGTCAAGCTAGTTGATCCTTTAGTGTCCTCAAACTTGAATCATTGCAGCTCAACTTCAGAAGGTTCTTCTAATGACATGACTTGTAGGCAAAGTTTGGATATTTTAAGAATATCACAGACAAGTTCTGATAACATGTCTGTTAGCTCAGATGAAATCAGGGCAGATTTAGATGACCAAGATTCGTCGTCACAATCTAGAAGGGAATCTTCCAATGCCTTAGGCTTAGAACAATATCAAACTCATGTTAGAACTGATCTTGATTCCACTGCATCTTTGAATGAGAATTTTCCTCAAGAAACAAAAGGTGATGACAAAGTCTTAAAAGCTCAGATGACTCCATCATCAGAGGCAAGGTCTGGAATCTTAAGTATATGGCAGCAACAACCAAAGAATTTAAGGTTAGGATCTTCACTTGTTGAAACTAGACCTAGCCCTTCTAGAATTGAAACCCAAGTTCAGAATTTGGCTAAAGAGTTGAAGAGCTCTTCAATTGATGCTCAAAGAGAAGCGACAGCAGAACTACGCCTTCTTGCTAAGCACAATATGGAAAATAGAATTATGATTGCATCTTGTGGAGTCATTACTTTATTAGTCAACCTACTCCAATCAACTGATACAAAGATCCAAGAAAATGCAGTTACGGCGCTTCTAAACTTATCGATCAACGACAATAACAAAATTGCAATTGCAGATGCTGGTGCAATTGATTCTCTAATTCATGTTCTTGAAACAGGAAGTCCTGAAGCCAAGGAGAATTCTGCAGCTGCACTTTATAGCCTATCAATGATGGAAGAAAATAGGATTAGGATAGGGAGATCACGGGCAATCAAGCCATTGGTAGGTTTACTAGCAAATGGAACCCCAAGAGGGAAAAAGGATGCTTCCACTGCATTGTTCAATCTGTCAATATTTCATGAAAACAAAGGACGGATCGTGCAGGCCGGCGCCATAAAGCACCTTGTGGGTTTAATGGATCCAGCAGCCGGAATGGTAGACAAGGTGGTGGCCCTTTTGGCAAATCTTGCATCAATTCCTGAAGGAAGAACTGAAATTGGTCATCAAGGTGCTATTCCTATTCTAGTTGATGTAATTGAGTTGGGTTCCGCAAGAGGGAAGGAAAATGCAGCTGCCACTCTTCTACATATTAGTTCAAATAGCACCAGGTTCTTGAGCTTAATGATCCATGAAGGAGCCATCCCACCATTAGTAGCATTATCACTATCAGGCACCCCAAGAGCCAAGAAAAAGTATGCACAGGCTCTACTTAACCATTGTAGAAGTCAAAGACATGGTAGTGCTAGATGA 2226 0.3953 MEISLLNVLVNVISSFSHLRFSRNVSSELMLKYYQKEEEILKLLKPTLEAITNTDLASDEVLLKIFEELNQAVQELRELFESWQLLCSKFYIVLQVESLISKIQIMALNIFNQLKASHQCLPNGLSFSHIEHCIEKVKNLGHEETSFIIKEAIMEQVEGLGPSSEVLEKLAENLGLSSNQEILIEALTLEKLKENAEQIENTTEAEYLRQIITLVTYMHERLIMLKEAQISSQVPVPADFCCPLSLEMMKDPVIVSSGQTYERVFIKKWIDLGLNVCPNTRQTLVHTNLIPNYTVKALILNWCELNNVKLVDPLVSSNLNHCSSTSEGSSNDMTCRQSLDILRISQTSSDNMSVSSDEIRADLDDQDSSSQSRRESSNALGLEQYQTHVRTDLDSTASLNENFPQETKGDDKVLKAQMTPSSEARSGILSIWQQQPKNLRLGSSLVETRPSPSRIETQVQNLAKELKSSSIDAQREATAELRLLAKHNMENRIMIASCGVITLLVNLLQSTDTKIQENAVTALLNLSINDNNKIAIADAGAIDSLIHVLETGSPEAKENSAAALYSLSMMEENRIRIGRSRAIKPLVGLLANGTPRGKKDASTALFNLSIFHENKGRIVQAGAIKHLVGLMDPAAGMVDKVVALLANLASIPEGRTEIGHQGAIPILVDVIELGSARGKENAAATLLHISSNSTRFLSLMIHEGAIPPLVALSLSGTPRAKKKYAQALLNHCRSQRHGSAR 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3790g00047 741 FunFam RING-type E3 ubiquitin transferase 443 738 - -
Pral3790g00047 741 Gene3D - 443 740 IPR011989 -
Pral3790g00047 741 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Pral3790g00047 741 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Pral3790g00047 741 MobiDBLite consensus disorder prediction 372 386 - -
Pral3790g00047 741 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Pral3790g00047 741 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Pral3790g00047 741 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Pral3790g00047 741 CDD RING-Ubox_PUB 237 289 IPR045210 -
Pral3790g00047 741 Pfam Armadillo/beta-catenin-like repeat 529 568 IPR000225 GO:0005515
Pral3790g00047 741 Pfam Armadillo/beta-catenin-like repeat 490 527 IPR000225 GO:0005515
Pral3790g00047 741 MobiDBLite consensus disorder prediction 357 371 - -
Pral3790g00047 741 PANTHER U BOX DOMAIN-CONTAINING 31 732 - -
Pral3790g00047 741 SMART arm_5 488 528 IPR000225 GO:0005515
Pral3790g00047 741 SMART arm_5 692 733 IPR000225 GO:0005515
Pral3790g00047 741 SMART arm_5 570 610 IPR000225 GO:0005515
Pral3790g00047 741 SMART arm_5 529 569 IPR000225 GO:0005515
Pral3790g00047 741 SMART arm_5 611 650 IPR000225 GO:0005515
Pral3790g00047 741 SMART arm_5 651 691 IPR000225 GO:0005515
Pral3790g00047 741 Coils Coil 66 86 - -
Pral3790g00047 741 SUPERFAMILY ARM repeat 459 734 IPR016024 -
Pral3790g00047 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Pral3790g00047 741 Coils Coil 189 209 - -
Pral3790g00047 741 SUPERFAMILY RING/U-box 233 312 - -
Pral3790g00047 741 MobiDBLite consensus disorder prediction 347 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3790g00047 Pral-Chr3790 964032 970417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3790g00047 1 741 U-box Gene Family AT5G67340 48.202 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3790g00047 - - pcin:129303726 1021.54