Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3790g00003 ATGTCTAGGATATGTGTTAAGAATCTACCAAAATATGTTGCAGAGGATCGTCTACGGGACTTATTTTCACAGAAAGGAGAAATAACAGATGTAAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAGTTTTGTTTTATTGGGTTTCGTACAGAGGACGAAGCCAAGGAAGCTATAAAATATTTCAATAGATCCTACCTTGACACCTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAGATATGCCTCGTCCATGGAGTCGACATTCATTGAAGAAAGGGGAAAAAGTGATCCAAGGTGGGAAGAAAGATGCTGAAAATAGAAGTAGTGTTAAGGCACAGAGAGGTGGAGAGAATTTGAGGGAGAGCACTGACATTGATGATCCCCAACTTCAAGAATTCCTTCAGGTTATGCAGCCTCGGGCAAAGACAAAATTGTGGGCAAACGATACTTCATCAGTGTTGGAGAATGTTAGTGAGAAGCAAAAAATAGCTGAGAATAAAAGCAAGGATCCTTCAATTCCAAAGCATGATGAGTTAGTTCAAAGTGACTCATCAGATGATGGATCCTCAGATGGCTCTTTAGATGATGGCTCTTCAGATAGTCATGAATCTGAGAAACCAAATAATCTTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGGCAAAGGAGTGGTCTGATTCTGAAAATAGTGATGATGAAGAAAACAATGCCTCTGTGAGCAATGATGATGACGGCAAAGAAGACAATGATAGTCATGGTGATGAAGATGAAGAAAATTTTGATGATCAATCTTTGAAAGGAACTGGAAGAGGTGATGCTCAAAACATAGACCTGTCAGGCCAAGAAGATATCTGTAATGAGGACAGTGACCATGAAAAGGTTGAAGTGAGAGGCCCTTCTAATTCTTCTGGTGATGAAATACCTGAGCAAGGGGTCTCTTCATCATGTCTGGAAAATGAGAAAGGAGTTTTTGAGTCTTGTCGACTGTTTGTCCGTAATCTGCCATATACAGCCACCGAGGAGGAACTTGAAGAACACTTCAGCAATTTCGGCACTGTCTCACAGGTTCATCTGGTTGTTGATAAAGATACAAAAAGGTCCAAAGGAATAGCATATATTCTTTACACATTTCCAGAATTTGCAGCCAGGGCACTAAAAGAGTTGGACAATTCAATTTTCCAAGGAAGATTACTGCATGTTTTGCCAGCCGTGCAAAGACCTTCAGACAGCAAGGAAAAGAATACATCAATGGACCAAAGCTCTAGAACTTTTAAGAAACAGAGAGAGGAGGAGAGGAAAGCAGCTGAAGCCAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGCGCCCTGATACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGTAAAAGTGATTTGCTTGACCAAGAAGCTAATGACCTTGCTGTGCGTATTGCTTTGGGAGAAACTCAAGTGATTGCAGAGACTAAAAAGGCCCTTAAAAATGCTGGCGTGAATGTGGAGTCTTTGGAGGAATTCGCCAATGGCAAAAAAGTTGGTGTTAAAAGAAGCAACCATGTGCTTTTAGTGAAGAACTTGCCATATGGTTCCTCAGAAAATGAACTAGCCAAGATGTTTGGGAAATTTGGGAATTTAGACAAAATAATTCTCCCTCCAACAAAGACATTGGCCTTGATTGTCTACCTCGAACCAGCTGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAGGATGCACCATTGTACTTGGAATGGGCTCCTTCCAATGTACTTAGCCAAAGTGTAACATCTGAGAACAATGAAAAGAGTGGCGCAATTGGTGAAAATGAGGCCAAACGGCTGATATTGGAACAGCATCTGGAGGGAGTATCAGATATGGACATCGATCAAGACAGAGTTGAGGCACGGTCTCTATTTGTCAAGAACCTCAACTTTAGGACATCAGACGAGAGTTTGAAGAATCATTTTAGTGAACACGTGAAAGAAGGAAGAATTTTGAGTGCCAAGGTGAAGAAGCATTTGAAAAATGGAAAACAGGTTTCTATGGGATTTGGATTTCTTGAATTTGATTCTGTGGAGACTGCTACGAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATTTTACAACTCTGTCATGCCAAGGACAGACAATTACCAAAAACAGTTGAGAAGGACAAAAGCTCAACAAAATTACTTGTAAGGAATGTGGCTTTTGAGGCAACAGAGAAGGAATTGAGACAGTTGTTCAGCCCATTCGGCCAGATTAAGAGCTTAAGGTTGCCAATGAAGTTTGGAAGTCATAGGGGTTTTGCTTTTGTGGAATACGTTACACAGCAAGAGGCACAAAATGCACTTAAAGCTCTTTCAAGCACCCACCTTTATGGCAGGCATCTGGTGTTAGAGAGAGCAAAGGAAGGCGAGAGTTTGGAGGAACTACGGGCTCGAACAGCCGCACAATTTGGTGATGAGCAAAATGGATTTCAAAAGCTATCCAAGAAAAGGAAGCACTTGTCAATCTTGGACGAAGGGAAGATGATGTTTGAAAGGATTGTTGATTAG 2625 0.4137 MSRICVKNLPKYVAEDRLRDLFSQKGEITDVKLMRTKDGKSRQFCFIGFRTEDEAKEAIKYFNRSYLDTCRITCEVARKVGDPDMPRPWSRHSLKKGEKVIQGGKKDAENRSSVKAQRGGENLRESTDIDDPQLQEFLQVMQPRAKTKLWANDTSSVLENVSEKQKIAENKSKDPSIPKHDELVQSDSSDDGSSDGSLDDGSSDSHESEKPNNLVHDDAISDMEYFKSRVAKEWSDSENSDDEENNASVSNDDDGKEDNDSHGDEDEENFDDQSLKGTGRGDAQNIDLSGQEDICNEDSDHEKVEVRGPSNSSGDEIPEQGVSSSCLENEKGVFESCRLFVRNLPYTATEEELEEHFSNFGTVSQVHLVVDKDTKRSKGIAYILYTFPEFAARALKELDNSIFQGRLLHVLPAVQRPSDSKEKNTSMDQSSRTFKKQREEERKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLLDQEANDLAVRIALGETQVIAETKKALKNAGVNVESLEEFANGKKVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGNLDKIILPPTKTLALIVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSQSVTSENNEKSGAIGENEAKRLILEQHLEGVSDMDIDQDRVEARSLFVKNLNFRTSDESLKNHFSEHVKEGRILSAKVKKHLKNGKQVSMGFGFLEFDSVETATNVCRDLQGTVLDGHALILQLCHAKDRQLPKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVLERAKEGESLEELRARTAAQFGDEQNGFQKLSKKRKHLSILDEGKMMFERIVD 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3790g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 534 596 IPR000504 GO:0003723
Pral3790g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Pral3790g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 409 IPR000504 GO:0003723
Pral3790g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 753 820 IPR000504 GO:0003723
Pral3790g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 654 728 IPR000504 GO:0003723
Pral3790g00003 874 CDD RRM5_RBM19_like 653 733 IPR034423 -
Pral3790g00003 874 CDD RRM6_RBM19_RRM5_MRD1 751 825 - -
Pral3790g00003 874 FunFam Multiple RNA-binding domain-containing protein 1 523 625 - -
Pral3790g00003 874 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 633 746 - -
Pral3790g00003 874 CDD RRM4_RBM19_RRM3_MRD1 532 603 - -
Pral3790g00003 874 MobiDBLite consensus disorder prediction 164 187 - -
Pral3790g00003 874 SMART rrm1_1 338 411 IPR000504 GO:0003723
Pral3790g00003 874 SMART rrm1_1 533 600 IPR000504 GO:0003723
Pral3790g00003 874 SMART rrm1_1 752 823 IPR000504 GO:0003723
Pral3790g00003 874 SMART rrm1_1 3 75 IPR000504 GO:0003723
Pral3790g00003 874 SMART rrm1_1 653 731 IPR000504 GO:0003723
Pral3790g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 652 735 IPR000504 GO:0003723
Pral3790g00003 874 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Pral3790g00003 874 CDD RRM3_RBM19_RRM2_MRD1 338 411 - -
Pral3790g00003 874 Gene3D - 649 742 IPR012677 -
Pral3790g00003 874 Gene3D - 312 452 IPR012677 -
Pral3790g00003 874 Gene3D - 1 126 IPR012677 -
Pral3790g00003 874 Gene3D - 524 628 IPR012677 -
Pral3790g00003 874 Gene3D - 743 851 IPR012677 -
Pral3790g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 532 604 IPR000504 GO:0003723
Pral3790g00003 874 MobiDBLite consensus disorder prediction 82 131 - -
Pral3790g00003 874 CDD RRM1_MRD1 2 77 - -
Pral3790g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Pral3790g00003 874 SUPERFAMILY RNA-binding domain, RBD 651 828 IPR035979 GO:0003676
Pral3790g00003 874 MobiDBLite consensus disorder prediction 421 448 - -
Pral3790g00003 874 MobiDBLite consensus disorder prediction 162 324 - -
Pral3790g00003 874 SUPERFAMILY RNA-binding domain, RBD 529 617 IPR035979 GO:0003676
Pral3790g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 415 IPR000504 GO:0003723
Pral3790g00003 874 MobiDBLite consensus disorder prediction 200 236 - -
Pral3790g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 751 827 IPR000504 GO:0003723
Pral3790g00003 874 MobiDBLite consensus disorder prediction 294 309 - -
Pral3790g00003 874 FunFam Multiple RNA-binding domain-containing protein 1 747 851 - -
Pral3790g00003 874 SUPERFAMILY RNA-binding domain, RBD 320 425 IPR035979 GO:0003676
Pral3790g00003 874 MobiDBLite consensus disorder prediction 82 114 - -
Pral3790g00003 874 MobiDBLite consensus disorder prediction 416 448 - -
Pral3790g00003 874 SMART rrm2_1 752 823 IPR003954 GO:0003676
Pral3790g00003 874 SMART rrm2_1 653 731 IPR003954 GO:0003676
Pral3790g00003 874 SMART rrm2_1 338 411 IPR003954 GO:0003676
Pral3790g00003 874 SMART rrm2_1 3 75 IPR003954 GO:0003676
Pral3790g00003 874 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 206 429 - -
Pral3790g00003 874 FunFam Multiple RNA-binding domain-containing protein 1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3790g00003 Pral-Chr3790 67858 81498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3790g00003 643 842 Eukaryotic Initiation Factors Gene Family AT1G49760 28.774 4.18e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3790g00003 K14787 - vvi:100247562 1127.85