Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3788g00004 ATGGAGGATAAGGCAGGAGAAAAAAATGAATTACAGCATGCACCGTCTTCAGTTGTGGCTGTAGGTATCAAGGGTGGCAAGAAAAGTACAACTATATTACAGTGGGCACTTAAGAGGTTTGTGCCGGAAGGGAGGATCATGTTTAAGCTGATACATGTCCATGCCAGTATAAAACGAATACCAACACCAATGGGAAATTTCATCCCTATTTCACAAGTGCGTCCTGATGTAGTGAATGCCTTCAGAAAGGAAGTTGAGTGGCAGAAAAGTCAAATGCTTCTACCCTATAAAAATATGTGTGATCAGGAAAAGGTATATGTAGATACAGTGGTGATAGAATCTGATGATGTTGCAGCTGCAATAGCAGAAGAAATTGCTAAGGGTGCCGTGACCAAACTTATTATTGGTGCATCATCTCGTAGCATATTTTCCAGCAAGCTTAAGGGTATTGCTGCAAAAATATCAGTTTGTACTCCAAGATTTTGTACAGTTTATGCTATTTCCAAAGGAAAATTGTCTTCTGTACGGCCGTCAGATGTACAAATTGATCAGAGCTTTGCAGACGATGGTAGTGAAACCAATGGTTCTACCAGTTCTTCAAACTGCACTTCCTCCTCTCCCCCGGACTCTGCCACAGTTGCTTTATATGGTCCTTTAAACTCCTCTTCAACAGAACAGCAATTTGAAGCTCTTTCCTCTGTTAATCAGACTGTCCTAAGTGCAAATCCTAGTTTTATTGAATCTAGCCATTGTGGATGTCAGTCCCTAGATACTGGAACAGAGAATAATGTTACAATTTCGTCTGCTAGAAATTATAGTATTGGCTATGGTCTTAGTCAGGCTTCAAGTTGCATAAGCTTTAAATCAGAAACAGAATCGCAGGTCCATGTTCAAAATTCCACCCTTGATGTGCTACCAGCAACTGAATCTCCTTCACCTGCTAGGCAGGAAAATATTAACCTTGAGCTGGAAAAGTTGAGGATTGAATTAAGACATGCACAAGGAATGCATGCAATAGCTCAAAATGAGAACATTGATGCATCACGGAAGCTGAATGATTTAAATAAGAGACGATCAGATGAATTAATGAAGCTCAATGAGATTATTGCTAAGGAAGAGTCGGCAAATGAATCATTAAGGCAAGAGAGAGAGAAATATGAAGCTGCAAAGAGAGAAACTGATTATTTGAAAGAATGTGCTGAGAGAGAAACTGCAGAAAGGAGAGAAATGGAGATGAAAGCTATTCGTGCTGCGCAAGAGAAAGAAAAACTAGAGTCTGCTCTTACTGGTTTGACCCCTCAGTACCATAAGTTTACATGGGACGAAATAGTGTCTGCTACCTCATCTTTCTCTGAAGATCTGAGAATCGGAATGGGAGCATATGGTACAGTGTACAAGTGTAACTTGCATCATACTGTTGTAGCTGTTAAAGTACTCCACTCTAAAGGGAGCCACAAAATCAAGCAATTCCAACGGGAGCTCGAAATCTTGTCCAGAGTTCGTCATCCTAATTTGCTGCTCCTTCTTGGTGCATGTCCTGATGATGGATGCCTTGTATATGAATATATGGAGAATGGTAGCTTGGAGGACCGGTTACTCAAGAAAAATGGTACGGCCCCACTTCCTTGGTATGAGAGATACCGGATTGCATGGGAAGTAGCCTCAGCTCTTGCCTTTCTTCACAGCTCAAAGCCAACACCCATCATCCACCGTGATTTAAAACCAGCAAACATTTTGCTTGACAGTAACTTAATGAGCAAGATTGGTGATATTGGTCTTTCTACTGTGCTCAATTCGGATGGCTCCTCCACCATGCACAAGGACACAGAGCCTGTGGGGACCCTTTGCTATATTGATCCTGAGTATCAACGAACTGGGTTGTTATCTCCAAAATCCGATGTATATGCTTTTGGAATGGTGATCTTACAATTATTGACAGCAAAACCGGCTATAGCACTCACTCATGTGGTAGAAACAGCAGTTGATGATGGAAAGCTCACAGATATATTGGACCCGGAGGCAGGAAGTTGGCCACTTCAGGAGACAATGGACTTGGCTCGATTAGGCCTTAGCTGTACAGAACTCCGTCGTAGAGACAGACCCAATTTAGATCACGTGATTCCTGCACTGGAAAGATTGAAAGAAGCTGCTGACAAAGCCCAAAGTTCCAGTCTTAATGTTAAATCAAAACCTCCTAATCATTTTATTTGCCCAATACTCCAGGATGTGATGGATGATCCGTGTGTTGCTGCGGATGGATATACATATGATCGCAGAGCAATCGAAACATGGCTTCAAGAGAATGACAAATCACCAATGACTAATATGGAACTTCCTCATAAGAATATAATCCCTAATTACACACTTCTATCAGCAATTATGGGGTGGAAGTCTGGAGGAAAATGA 2406 0.416 MEDKAGEKNELQHAPSSVVAVGIKGGKKSTTILQWALKRFVPEGRIMFKLIHVHASIKRIPTPMGNFIPISQVRPDVVNAFRKEVEWQKSQMLLPYKNMCDQEKVYVDTVVIESDDVAAAIAEEIAKGAVTKLIIGASSRSIFSSKLKGIAAKISVCTPRFCTVYAISKGKLSSVRPSDVQIDQSFADDGSETNGSTSSSNCTSSSPPDSATVALYGPLNSSSTEQQFEALSSVNQTVLSANPSFIESSHCGCQSLDTGTENNVTISSARNYSIGYGLSQASSCISFKSETESQVHVQNSTLDVLPATESPSPARQENINLELEKLRIELRHAQGMHAIAQNENIDASRKLNDLNKRRSDELMKLNEIIAKEESANESLRQEREKYEAAKRETDYLKECAERETAERREMEMKAIRAAQEKEKLESALTGLTPQYHKFTWDEIVSATSSFSEDLRIGMGAYGTVYKCNLHHTVVAVKVLHSKGSHKIKQFQRELEILSRVRHPNLLLLLGACPDDGCLVYEYMENGSLEDRLLKKNGTAPLPWYERYRIAWEVASALAFLHSSKPTPIIHRDLKPANILLDSNLMSKIGDIGLSTVLNSDGSSTMHKDTEPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAIALTHVVETAVDDGKLTDILDPEAGSWPLQETMDLARLGLSCTELRRRDRPNLDHVIPALERLKEAADKAQSSSLNVKSKPPNHFICPILQDVMDDPCVAADGYTYDRRAIETWLQENDKSPMTNMELPHKNIIPNYTLLSAIMGWKSGGK 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3788g00004 801 CDD STK_N 18 170 - -
Pral3788g00004 801 ProSiteProfiles U-box domain profile. 730 801 IPR003613 GO:0004842|GO:0016567
Pral3788g00004 801 Coils Coil 316 357 - -
Pral3788g00004 801 Coils Coil 362 392 - -
Pral3788g00004 801 Gene3D Phosphorylase Kinase; domain 1 429 522 - -
Pral3788g00004 801 Pfam Protein kinase domain 453 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3788g00004 801 PANTHER OS02G0152300 PROTEIN 18 793 - -
Pral3788g00004 801 SMART Ubox_2 734 796 IPR003613 GO:0004842|GO:0016567
Pral3788g00004 801 Pfam U-box domain 732 797 IPR003613 GO:0004842|GO:0016567
Pral3788g00004 801 MobiDBLite consensus disorder prediction 185 216 - -
Pral3788g00004 801 Coils Coil 400 427 - -
Pral3788g00004 801 ProSiteProfiles Protein kinase domain profile. 450 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3788g00004 801 Gene3D Transferase(Phosphotransferase) domain 1 523 731 - -
Pral3788g00004 801 SUPERFAMILY Protein kinase-like (PK-like) 431 710 IPR011009 -
Pral3788g00004 801 CDD RING-Ubox_WDSUB1-like 732 786 - -
Pral3788g00004 801 ProSitePatterns Protein kinases ATP-binding region signature. 456 477 IPR017441 GO:0005524
Pral3788g00004 801 Gene3D HUPs 11 150 IPR014729 -
Pral3788g00004 801 SMART serkin_6 450 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3788g00004 801 SUPERFAMILY RING/U-box 727 797 - -
Pral3788g00004 801 CDD STKc_IRAK 456 713 - -
Pral3788g00004 801 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 148 - -
Pral3788g00004 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672|GO:0006468
Pral3788g00004 801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 800 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3788g00004 Pral-Chr3788 58786 66499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3788g00004 16 798 U-box Gene Family AT4G25160 51.820 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral3788g00004 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3788g00004 - - gsj:114409387 1098.57