Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3781g00017 ATGGGAAATTGCAGCGGCGTAGCCTCCGGGCATAGCCAACCAGGCAACGCCGACGCCGCCCATTCCGGCCGTGCTCCTGACCAACGCAACAATGGCATCACCGTCCTCCCTCCGGACTCCAACCCCTCTCGTCCTCCTCCACCACCTACACCAGTTCTCTCTTCCGCCGTCGGACGCGTCCTTGGCCGACCCATCGAGGACGTGCGTTCCACCTATATCTTCGGCCGCGAACTCGGTCGTGGTCAATTTGGTGTTACCTACCTGGTCACCCACAAAGTCACCAAGGAGCAATTCGCCTGCAAATCCATCGCTACCCGCAAACTGATTAACCGCGACGATTTGGAGGACATTCGGCGCGAGGTTCAGATCATGTACCACCTCACTGGTCATCGCAACATTGTGGAGCTTAAGGGAGCTTACGAGGATCGCCACTCTGTTAATTTAATCATGGAGCTTTGCGCTGGCGGGGAGCTGTTTGATAGGATCATAGCCAAGGGGCATTACTCGGAGCGAGCCGCGGCAGACTTATGTCGGCAGATCGTAACGGTTGTGCATGATTGTCACACCATGGGAGTTATACATAGAGACTTGAAACCTGAAAATTTCTTATTCCTCAGTAAGGAGGAGAGTTCACCTCTTAAGGCAACTGATTTTGGCCTCTCCGTGTTCTTCAAGCCAGGAGATGTATTTAGAGAGCTTGTTGGGAGTGCATATTATGTTGCTCCTGAGGTCCTGAGTAGAAGCTACGGACCAGAAGCTGATATTTGGAGTGCTGGGGTTATATTATACATTCTTCTCTCCGGCGTCCCACCCTTCTGGGCAGAAAATGAACAGGGTATCTTCAATTCAATTCTCCGTGGGCATATTGATTTCGCATCAGAGCCTTGGCCTTCCATCTCAAGTAGTGCCAAAGACCTCATCAAAAAGATGCTTCAATCTAACCCAAAAGAAAGGCTTTCAACAGTTGAAGTCCTTAATCATCCTTGGATGAGAGAAGATGGGGATGCATCTGATAAGCCACTTGATATTGCTGTTCTATCCAGAATGAAACAATTCCAGGCAATGAACAAGCTAAAGAAAGTAGCTTTGAAGGTAATTGCAGAAAACCTCTCCGAAGAAGAAATCATTGGTTTAAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATAACTTTTGATGAATTAAAAGCTGGTCTCCACAAACTGGGTAGTAAACTTTCTGAGCCTGAAATAAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAGCCATTGATTATATTGAGTTTATATCGGCTACCATGCACATGAATCGAGTGGAAAGAGAGGACCACCTATACAAAGCCTTTGAATATTTTGACAAGGATAAGAGCGGGTATATCACCAAGGAAGAGTTGGAATCTGCCCTTAGGAAGTATAATATGGGTGATGAGAAAACTATAAAGGAGATAATTGCTGAAGTTGACTCAGACAATGATGGAAAAATTAACTACGAAGAGTTCGTAGCCATGATGAGGAGAGGCAACCCGGACTTCGCAAACAACAGACATCGTTAA 1569 0.4691 MGNCSGVASGHSQPGNADAAHSGRAPDQRNNGITVLPPDSNPSRPPPPPTPVLSSAVGRVLGRPIEDVRSTYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDLEDIRREVQIMYHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAADLCRQIVTVVHDCHTMGVIHRDLKPENFLFLSKEESSPLKATDFGLSVFFKPGDVFRELVGSAYYVAPEVLSRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFNSILRGHIDFASEPWPSISSSAKDLIKKMLQSNPKERLSTVEVLNHPWMREDGDASDKPLDIAVLSRMKQFQAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFDELKAGLHKLGSKLSEPEIRQLMEAADVDGNGAIDYIEFISATMHMNRVEREDHLYKAFEYFDKDKSGYITKEELESALRKYNMGDEKTIKEIIAEVDSDNDGKINYEEFVAMMRRGNPDFANNRHR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3781g00017 522 SMART serkin_6 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3781g00017 522 Pfam Protein kinase domain 74 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3781g00017 522 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Pral3781g00017 522 CDD STKc_CAMK 72 329 - -
Pral3781g00017 522 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Pral3781g00017 522 CDD EFh 378 437 IPR002048 GO:0005509
Pral3781g00017 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Pral3781g00017 522 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Pral3781g00017 522 SUPERFAMILY Protein kinase-like (PK-like) 46 352 IPR011009 -
Pral3781g00017 522 FunFam calcium-dependent protein kinase 1 158 337 - -
Pral3781g00017 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 71 505 - -
Pral3781g00017 522 Gene3D - 339 513 - -
Pral3781g00017 522 MobiDBLite consensus disorder prediction 1 16 - -
Pral3781g00017 522 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Pral3781g00017 522 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Pral3781g00017 522 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Pral3781g00017 522 CDD EFh 452 510 IPR002048 GO:0005509
Pral3781g00017 522 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Pral3781g00017 522 ProSiteProfiles Protein kinase domain profile. 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3781g00017 522 SMART efh_1 449 477 IPR002048 GO:0005509
Pral3781g00017 522 SMART efh_1 413 441 IPR002048 GO:0005509
Pral3781g00017 522 SMART efh_1 484 512 IPR002048 GO:0005509
Pral3781g00017 522 SMART efh_1 377 405 IPR002048 GO:0005509
Pral3781g00017 522 Gene3D Transferase(Phosphotransferase) domain 1 158 338 - -
Pral3781g00017 522 Gene3D Phosphorylase Kinase; domain 1 74 157 - -
Pral3781g00017 522 FunFam Calcium-dependent protein kinase 1 74 157 - -
Pral3781g00017 522 Pfam EF-hand domain pair 378 438 IPR002048 GO:0005509
Pral3781g00017 522 Pfam EF-hand domain pair 448 510 IPR002048 GO:0005509
Pral3781g00017 522 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Pral3781g00017 522 FunFam Calcium-dependent protein kinase 1 338 513 - -
Pral3781g00017 522 ProSiteProfiles EF-hand calcium-binding domain profile. 481 515 IPR002048 GO:0005509
Pral3781g00017 522 MobiDBLite consensus disorder prediction 39 53 - -
Pral3781g00017 522 MobiDBLite consensus disorder prediction 1 55 - -
Pral3781g00017 522 SUPERFAMILY EF-hand 369 510 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3781g00017 Pral-Chr3781 381544 388857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3781g00017 58 522 EF-hand Containing Proteins AT4G23650 79.140 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pral3781g00017 Pkinase 4.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3781g00017 K13412 - qsa:O6P43_034294 883.248