Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral377g00003 ATGGAGAATGATATGTTTGGTGCTCCAATGGATACGGCTGGCCGAAGTTACGCTGTCTTAGATGAAACACCAAATGCACTCATTCAGGGCTATTCATTTGACCAAACCCGCATCATGAATGGAATTTCAATGCTCGCTGGAATGCAAGGTGAACTCATAAGTAGTCTCCAATTGGATGTTCCTCTAATGAATCCTGCCTGCATTGCTCATCCTAATTCCTTGGTTCCATCCCAAGGGAAGAACATTGTAGCTGATGCCTCACTTGGAAACCCATGTCCCCGAAACAACAGTGTGTTTCAAGATCAACGAGCTGGAGGCACAATCTCTCCTGCTTCCCCAGCTGCCACTCCTGCTGCAAGATTTGGTCTTGAAGAGAGCCTAGAAAAATCAGCAGCTTTGACTCCTTCAGTCTGTTCATTGGAGGCATTGGCACCATATATGTTGAGCAACTGGCAGGATAATTCAGACACTTTGCTTCCAACTTCTGGAGATCGTGGGTATGATACTAGGTTCCTGACCTATTCGTCCGCAGCGAACCTGGATCCAAACGGATGGACATCTTCAAATGCTGCAAACTTGACCCATCAGGGTTATGATTACCCAAATTTCAGGAATGAGCTCTCATTAAGTCTAGCGACCTCTCCCACCACAGGTCAGTGCTCAGAGGTGAGTTCTGATAGCTTGGAACAAGCCTCCTGTAGCAGTAAGGGGGTTTCTAGGAGTTTGGGTTCCAATAGACGTGTGAATTTTTCGCAAGCAATATTGGGGTCCGCATATCTTGCTGGGATTCAAGAAATACTTGCTCAAATTGCAAGGTATTCACTTGAAAATATAGAACAGATAAATTGTTCAGCTGGTTGCAGTAGAGCCAGAGCAGAAGGGAATATATCAACCTCAGCTCCTCCATTCAGGAGCATGACAGAGACAACAAATCACAATGCAGATTCTATGTTTGAAGCTCAAGCAAATTCTTCATTTGCAAGACACGATGCTGCTGAATCAAAGAAATCCCGGCTTCTGACACTTCTACAGCTGGTGGACAGTCGATATAATCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTTCATGCTGCTACAGAGTTGGACCCGCAAGTTCATACTCATTTTGCCCTTAAGACAATCTCTGTGCTGTACAAGGATTTGCGCGAGAGGATAAGCAATTATATCCTTTCCATGGGAGAAAGATTTAACAACTCCCGCTCAGAAGAAGAGAAGGAAAGGTCTACGGAAGCTTTATTCATCGAAAAGCACTGGGCCCTGCAGCAATTGAAAAGAAAAGGGCATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAACGATCTGTCTCTGTCCTACGAGCCTGGATGTTTCAGAATTTCCTCCATCCGTATCCAAAAGATGCAGAGAAGCAGTTACTTGCAGTAAAAAGTGGACTGACGAGAAGCCAGGTATCAAACTGGTTCATTAATGCTCGTGTGAGGCTGTGGAAACCTTTGATTGAGGAAATGCACGCTGAAATGAACAGAAGAAAGGCTCTTCGAAATGAAGAGGGCACGCAGAGCAGCCACAGAAGCAGCAGGGTACGCCTGGGCAATCAAAGATTTACTACCAATTCAAAGTAA 1629 0.4524 MENDMFGAPMDTAGRSYAVLDETPNALIQGYSFDQTRIMNGISMLAGMQGELISSLQLDVPLMNPACIAHPNSLVPSQGKNIVADASLGNPCPRNNSVFQDQRAGGTISPASPAATPAARFGLEESLEKSAALTPSVCSLEALAPYMLSNWQDNSDTLLPTSGDRGYDTRFLTYSSAANLDPNGWTSSNAANLTHQGYDYPNFRNELSLSLATSPTTGQCSEVSSDSLEQASCSSKGVSRSLGSNRRVNFSQAILGSAYLAGIQEILAQIARYSLENIEQINCSAGCSRARAEGNISTSAPPFRSMTETTNHNADSMFEAQANSSFARHDAAESKKSRLLTLLQLVDSRYNQCLDEIHTVVSAFHAATELDPQVHTHFALKTISVLYKDLRERISNYILSMGERFNNSRSEEEKERSTEALFIEKHWALQQLKRKGHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVRLWKPLIEEMHAEMNRRKALRNEEGTQSSHRSSRVRLGNQRFTTNSK 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral377g00003 542 Pfam Associated with HOX 254 395 IPR006563 -
Pral377g00003 542 Gene3D - 435 514 - -
Pral377g00003 542 SMART HOX_1 440 504 IPR001356 GO:0003677
Pral377g00003 542 Pfam Homeobox KN domain 457 496 IPR008422 GO:0003677|GO:0006355
Pral377g00003 542 ProSiteProfiles 'Homeobox' domain profile. 437 500 IPR001356 GO:0003677
Pral377g00003 542 MobiDBLite consensus disorder prediction 526 542 - -
Pral377g00003 542 MobiDBLite consensus disorder prediction 513 542 - -
Pral377g00003 542 SMART prehox3 248 396 IPR006563 -
Pral377g00003 542 CDD homeodomain 440 500 IPR001356 GO:0003677
Pral377g00003 542 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 188 521 - -
Pral377g00003 542 SUPERFAMILY Homeodomain-like 442 508 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral377g00003 Pral-Chr377 3598 6742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral377g00003 205 513 Homeobox Transcription Factor Family AT4G32980 57.143 7.62e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral377g00003 POX 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral377g00003 - - gmx:100812648 559.296