Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral377g00002 ATGAAAAGCATGCAAAGAAACCAACCAACGCACTTGTGGTTCTCTCTGGACAACTGCATATGCTGGCAATCAGCTGTGAAATATTTGCAAGGCTTGGGTTTGCCTGGCTTAGGGGAAGTGGATACGGCTGGCCGAAGTTACGCTGTCTTAGATGAAACACCAAATGCACTCATTCAGGGCTATTCATTTGACCAAACCCGCATCATGAATGGAATTTCAATGCTCGCTGGAATGCAAGGTGAACTCATAAGTAGTCTCCAATTGGATGTTCCTCTAATGAATCCTGCCTGCATTGCTCATCCTAATTCCTTGGTTCCATCCCAAGGGAAGAACATTGTAGCTGATGCCTCACTTGGAAACCCATGTCCCCGAAACAACAGTGTGTTTCAAGATCAACGAGCTGGAGGCACAATCTCTCCTGCTTCCCCAGCTGCCACTCCTGCTGCAAGATTTGGTCTTGAAGAGAGCCTAGAAAAATCAGCAGCTTTGACTCCTTCAGTCTGTTCATTGGAGGCATTGGCACCATATATGTTGAGCAACTGGCAGGATAATTCAGACACTTTGCTTCCAACTTCTGGAGATCGTGGGTATGATACTAGGTTCCTGACCTATTCGTCCGCAGCGAACCTGGATCCAAACGGATGGACATCTTCAAATGCTGCAAACTTGACCCATCAGGGTTATGATTACCCAAATTTCAGGAATGAGCTCTCATTAAGTCTAGCGACCTCTCCCACCACAGGTCAGTGCTCAGAGGTGAGTTCTGATAGCTTGGAACAAGCCTCCTGTAGCAGTAAGGGGGTTTCTAGGAGTTTGGGTTCCAATAGACGTGTGAATTTTTCGCAAGCAATATTGGGGTCCGCATATCTTGCTGGGATTCAAGAAATACTTGCTCAAATTGCAAGGTATTCACTTGAAAATATAGAACAGATAAATTGTTCAGCTGGTTGCAGTAGAGCCAGAGCAGAAGGGAATATATCAACCTCAGCTCCTCCATTCAGGAGCATGACAGAGACAACAAATCACAATGCAGATTCTATGTTTGAAGCTCAAGCAAATTCTTCATTTGCAAGACACGATGCTGCTGAATCAAAGAAATCCCGGCTTCTGACACTTCTACAGCTGGTGGACAGTCGATATAATCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTTCATGCTGCTACAGAGTTGGACCCGCAAGTTCATACTCATTTTGCCCTTAAGACAATCTCTGTGCTGTACAAGGATTTGCGCGAGAGGATAAGCAATTATATCCTTTCCATGGGAGAAAGATTTAACAACTCCCGCTCAGAAGAAGAGAAGGAAAGGTCTACGGAAGCTTTATTCATCGAAAAGCACTGGGCCCTGCAGCAATTGAAAAGAAAAGGGCATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAACGATCTGTCTCTGTCCTACGAGCCTGGATGTTTCAGAATTTCCTCCATCCGTATCCAAAAGATGCAGAGAAGCAGTTACTTGCAGTAAAAAGTGGACTGACGAGAAGCCAGGTATCAAACTGGTTCATTAATGCTCGTGTGAGGCTGTGGAAACCTTTGATTGAGGAAATGCACGCTGAAATGAACAGAAGAAAGGCTCTTCGAAATGAAGAGGGCACGCAGAGCAGCCACAGAAGCAGCAGGGTACGCCTGGGCAATCAAAGATTTACTACCAATTCAAAGTAA 1719 0.4543 MKSMQRNQPTHLWFSLDNCICWQSAVKYLQGLGLPGLGEVDTAGRSYAVLDETPNALIQGYSFDQTRIMNGISMLAGMQGELISSLQLDVPLMNPACIAHPNSLVPSQGKNIVADASLGNPCPRNNSVFQDQRAGGTISPASPAATPAARFGLEESLEKSAALTPSVCSLEALAPYMLSNWQDNSDTLLPTSGDRGYDTRFLTYSSAANLDPNGWTSSNAANLTHQGYDYPNFRNELSLSLATSPTTGQCSEVSSDSLEQASCSSKGVSRSLGSNRRVNFSQAILGSAYLAGIQEILAQIARYSLENIEQINCSAGCSRARAEGNISTSAPPFRSMTETTNHNADSMFEAQANSSFARHDAAESKKSRLLTLLQLVDSRYNQCLDEIHTVVSAFHAATELDPQVHTHFALKTISVLYKDLRERISNYILSMGERFNNSRSEEEKERSTEALFIEKHWALQQLKRKGHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVRLWKPLIEEMHAEMNRRKALRNEEGTQSSHRSSRVRLGNQRFTTNSK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral377g00002 572 SUPERFAMILY Homeodomain-like 472 538 IPR009057 -
Pral377g00002 572 MobiDBLite consensus disorder prediction 556 572 - -
Pral377g00002 572 MobiDBLite consensus disorder prediction 543 572 - -
Pral377g00002 572 SMART prehox3 278 426 IPR006563 -
Pral377g00002 572 SMART HOX_1 470 534 IPR001356 GO:0003677
Pral377g00002 572 ProSiteProfiles 'Homeobox' domain profile. 467 530 IPR001356 GO:0003677
Pral377g00002 572 Gene3D - 465 544 - -
Pral377g00002 572 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 219 551 - -
Pral377g00002 572 Pfam Homeobox KN domain 487 526 IPR008422 GO:0003677|GO:0006355
Pral377g00002 572 Pfam Associated with HOX 284 425 IPR006563 -
Pral377g00002 572 CDD homeodomain 470 530 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral377g00002 Pral-Chr377 3598 6742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral377g00002 235 543 Homeobox Transcription Factor Family AT4G32980 57.143 7.32e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral377g00002 POX 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral377g00002 - - gmx:100812648 548.51