Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral377g00001 ATGAAAAGCATGCAAAGAAACCAACCAACGCACTTGTGGTTCTCTCTGGACAACTGCATATGCTGGCAATCAGCTGTGAAATATTTGCAAGGCTTGGGTTTGCCTGGCTTAGGGGAAGTGGATACGGCTGGCCGAAGTTACGCTGTCTTAGATGAAACACCAAATGCACTCATTCAGGGCTATTCATTTGACCAAACCCGCATCATGAATGGAATTTCAATGCTCGCTGGAATGCAAGGGAAGAACATTGTAGCTGATGCCTCACTTGGAAACCCATGTCCCCGAAACAACAGTGTGTTTCAAGATCAACGAGCTGGAGGCACAATCTCTCCTGCTTCCCCAGCTGCCACTCCTGCTGCAAGATTTGGTCTTGAAGAGAGCCTAGAAAAATCAGCAGCTTTGACTCCTTCAGTCTGTTCATTGGAGGCATTGGCACCATATATGTTGAGCAACTGGCAGGATAATTCAGACACTTTGCTTCCAACTTCTGGAGATCGTGGGTATGATACTAGGTTCCTGACCTATTCGTCCGCAGCGAACCTGGATCCAAACGGATGGACATCTTCAAATGCTGCAAACTTGACCCATCAGGGTTATGATTACCCAAATTTCAGGAATGAGCTCTCATTAAGTCTAGCGACCTCTCCCACCACAGGTCAGTGCTCAGAGGTGAGTTCTGATAGCTTGGAACAAGCCTCCTGTAGCAGTAAGGGGGTTTCTAGGAGTTTGGGTTCCAATAGACGTGTGAATTTTTCGCAAGCAATATTGGGGTCCGCATATCTTGCTGGGATTCAAGAAATACTTGCTCAAATTGCAAGGTATTCACTTGAAAATATAGAACAGATAAATTGTTCAGCTGGTTGCAGTAGAGCCAGAGCAGAAGGGAATATATCAACCTCAGCTCCTCCATTCAGGAGCATGACAGAGACAACAAATCACAATGCAGATTCTATGTTTGAAGCTCAAGCAAATTCTTCATTTGCAAGACACGATGCTGCTGAATCAAAGAAATCCCGGCTTCTGACACTTCTACAGCTGGTGGACAGTCGATATAATCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTTCATGCTGCTACAGAGTTGGACCCGCAAGTTCATACTCATTTTGCCCTTAAGACAATCTCTGTGCTGTACAAGGATTTGCGCGAGAGGATAAGCAATTATATCCTTTCCATGGGAGAAAGATTTAACAACTCCCGCTCAGAAGAAGAGAAGGAAAGGTCTACGGAAGCTTTATTCATCGAAAAGCACTGGGCCCTGCAGCAATTGAAAAGAAAAGGGCATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAACGATCTGTCTCTGTCCTACGAGCCTGGATGTTTCAGAATTTCCTCCATCCGTATCCAAAAGATGCAGAGAAGCAGTTACTTGCAGTAAAAAGTGGACTGACGAGAAGCCAGGTATCAAACTGGTTCATTAATGCTCGTGTGAGGCTGTGGAAACCTTTGATTGAGGAAATGCACGCTGAAATGAACAGAAGAAAGGCTCTTCGAAATGAAGAGGGCACGCAGAGCAGCCACAGAAGCAGCAGGGTACGCCTGGGCAATCAAAGATTTACTACCAATTCAAAGTAA 1632 0.4553 MKSMQRNQPTHLWFSLDNCICWQSAVKYLQGLGLPGLGEVDTAGRSYAVLDETPNALIQGYSFDQTRIMNGISMLAGMQGKNIVADASLGNPCPRNNSVFQDQRAGGTISPASPAATPAARFGLEESLEKSAALTPSVCSLEALAPYMLSNWQDNSDTLLPTSGDRGYDTRFLTYSSAANLDPNGWTSSNAANLTHQGYDYPNFRNELSLSLATSPTTGQCSEVSSDSLEQASCSSKGVSRSLGSNRRVNFSQAILGSAYLAGIQEILAQIARYSLENIEQINCSAGCSRARAEGNISTSAPPFRSMTETTNHNADSMFEAQANSSFARHDAAESKKSRLLTLLQLVDSRYNQCLDEIHTVVSAFHAATELDPQVHTHFALKTISVLYKDLRERISNYILSMGERFNNSRSEEEKERSTEALFIEKHWALQQLKRKGHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVRLWKPLIEEMHAEMNRRKALRNEEGTQSSHRSSRVRLGNQRFTTNSK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral377g00001 543 SMART HOX_1 441 505 IPR001356 GO:0003677
Pral377g00001 543 CDD homeodomain 441 501 IPR001356 GO:0003677
Pral377g00001 543 Pfam Associated with HOX 255 396 IPR006563 -
Pral377g00001 543 Gene3D - 436 515 - -
Pral377g00001 543 Pfam Homeobox KN domain 458 497 IPR008422 GO:0003677|GO:0006355
Pral377g00001 543 SMART prehox3 249 397 IPR006563 -
Pral377g00001 543 ProSiteProfiles 'Homeobox' domain profile. 438 501 IPR001356 GO:0003677
Pral377g00001 543 MobiDBLite consensus disorder prediction 527 543 - -
Pral377g00001 543 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 191 522 - -
Pral377g00001 543 MobiDBLite consensus disorder prediction 514 543 - -
Pral377g00001 543 SUPERFAMILY Homeodomain-like 443 509 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral377g00001 Pral-Chr377 3598 6742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral377g00001 206 514 Homeobox Transcription Factor Family AT4G32980 57.143 2.68e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral377g00001 POX 1.6e-26 No_clan