Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3779g00003 ATGAGGCAAGCAGGGGCATATTCAGGGCTGCATCAAGGAAGGATGGGGCCTCAGGCGCTGCCATTGGCGAGGATAAAGAAGATAATGAAGAGATCTGGGGATGACGTCAAGATGATATCAGGTGAAGCTCCCATTGCTTTTGCCAAAGCTTGTGAGCTCTTCATTGAAGAGCTCACCAGAAGGTCTTGGCTCATGACCACTCAGTCCAAACGCAGAACTCTCCTCAAAGACGACGTCGCTTCTGCCGTGATCGCCACAGACCTCTTCGACTTCTTGATCTCTTTGGTCACCCACGCTAGTGCCTCATCTCCCTCTTCTTCCACCATGCAATCTTAA 336 0.5089 MRQAGAYSGLHQGRMGPQALPLARIKKIMKRSGDDVKMISGEAPIAFAKACELFIEELTRRSWLMTTQSKRRTLLKDDVASAVIATDLFDFLISLVTHASASSPSSSTMQS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3779g00003 111 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 99 - -
Pral3779g00003 111 Gene3D Histone, subunit A 5 98 IPR009072 GO:0046982
Pral3779g00003 111 FunFam Nuclear transcription factor Y subunit C 3 98 - -
Pral3779g00003 111 SUPERFAMILY Histone-fold 13 92 IPR009072 GO:0046982
Pral3779g00003 111 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 83 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3779g00003 Pral-Chr3779 73849 74184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3779g00003 18 96 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.291 2.17e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pral3779g00003 CBFD_NFYB_HMF 5e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3779g00003 - - pvy:116116405 155.221