Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3775g00008 | ATGTCGTTCATCGGAACCCAACAGAAATGCAAGGCTTGTGATAAAACTGCTCATTTTGTGGATTCTGTGTCAGCAGACGGAGTTATTTATCATAAGACTTGCTTCAAATGCAGTCAGTGTAACGGCGTCCTTGCGATAAGCACGTACTCGTCGGTGGATGGAGTGTTGTACTGTAAGCCTCATTTTGAGCAGCTTTTCAAGAGCACTGGCGGACTCACCCGGAGATCCCTATCAACTGGAAAGAATGAGCTGACGAGGGCACCAAGCAAATTGTCGGCCATGTTCTCTGGAACTCAAGACAAATGCTCTTCTTGCAAGAAAACTGTCTACCCACTTGAAAAGGTGACAGTGGAAGGAGAATTCTATCACAAGTCATGCTTCAGGTGTGCTCAAGGAGGCTGTTTTCTGAGCCCATCAAACTATGCAGCACTTGATGGGTTTTTATATTGTAAGCATCACTTTGCTCAGTTGTTCAAGGAGAAAGGATGCTATTCCCATGTCTCTAAATCTGCTTCCATGAAGAAAAACAACGAAGCTCAGAATAAGCCTGAAGCTACATCATCTGATGAACATGATAATTCTGACCCACCTCCTCCTCCTGCTGCTGCAAATCATGATGATGATGAACAACAAGAAGTTCCTGAGTAG | 648 | 0.4444 | MSFIGTQQKCKACDKTAHFVDSVSADGVIYHKTCFKCSQCNGVLAISTYSSVDGVLYCKPHFEQLFKSTGGLTRRSLSTGKNELTRAPSKLSAMFSGTQDKCSSCKKTVYPLEKVTVEGEFYHKSCFRCAQGGCFLSPSNYAALDGFLYCKHHFAQLFKEKGCYSHVSKSASMKKNNEAQNKPEATSSDEHDNSDPPPPPAAANHDDDEQQEVPE | 215 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3775g00008 | 215 | FunFam | LIM domain and actin-binding 1 | 96 | 166 | - | - | |
| Pral3775g00008 | 215 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Pral3775g00008 | 215 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 72 | - | - | |
| Pral3775g00008 | 215 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Pral3775g00008 | 215 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 128 | 167 | - | - | |
| Pral3775g00008 | 215 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Pral3775g00008 | 215 | ProSiteProfiles | LIM domain profile. | 100 | 160 | IPR001781 | - | |
| Pral3775g00008 | 215 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Pral3775g00008 | 215 | SMART | lim_4 | 101 | 153 | IPR001781 | - | |
| Pral3775g00008 | 215 | Gene3D | Cysteine Rich Protein | 4 | 73 | - | - | |
| Pral3775g00008 | 215 | Gene3D | Cysteine Rich Protein | 96 | 166 | - | - | |
| Pral3775g00008 | 215 | Pfam | LIM domain | 102 | 157 | IPR001781 | - | |
| Pral3775g00008 | 215 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Pral3775g00008 | 215 | CDD | LIM2_SF3 | 102 | 162 | - | - | |
| Pral3775g00008 | 215 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Pral3775g00008 | 215 | PANTHER | OS06G0237300 PROTEIN | 86 | 210 | - | - | |
| Pral3775g00008 | 215 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 94 | 127 | - | - | |
| Pral3775g00008 | 215 | MobiDBLite | consensus disorder prediction | 170 | 215 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral3775g00008 | Pral-Chr3775 | 108941 | 112060 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Pral3775g00008 | LIM | 9.1e-12 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3775g00008 | - | K24413 | mof:131163518 | 303.138 |