Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3772g00067 ATGCCACCGAGGACGGTGAAGAGAGGGGCTGCAGCGTCGGCCAGGAGAGGGGGGAGAGGTGGCAGAGGAACGCCTAATAAGGCTGCCCAGAATCAGCAGAATCTTGATTCTGTACAAGAGGTTGTGAAGCATGAAGAAAAGCAGGTCGTTGAGGACAAGCCCGTTGTCGAGGAGAAACCTGTTGTGGAGGAGAAACCCGTTGAGGAGAAGCAAGTAGGTATTGATATGAATCAGATGGCTTTTGATATAAACCAAGTCGCTTCAGAGGCTGAGGAAGCGAATCTTGTCACAAATGGGTCGGCTGCTGTGAAAAACGACGAAGAGGAGGTTAAGGAATCAATAGATGAATATGAAAAAGATGAACGCTTAGATCTGGAGGATAATGATCCGGAGTATGAAACTGAGGAGTATGGCGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGATGTTCAGGAGGTAGGAGATGAGATGGAGGAAGAACCTGATGAGAATTTAGGTGAAGAAGAGGGTGATATGGTTGAGGAGGAAGTGGAAGACGTTCATGAAGAGCTTGAGGGTGAAGAGGATGATGAGCATCGTGGGGAGGAGCATGAGCGTGAGCATGACCATGGGCAGAATGCTGATGTAGAAGAAGAGGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGCAAGGAATTTGAAGTATTTGTTGGAGGCTTAGATAAAGATGCTACTGAAGATGATTTGAGGAAGGTTTTTAGCGCAGTTGGTGAGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAAAATAAGGGTTTTGCGTTCTTGCGATTTGCAACTGTGGAACAAGCTAAACGAGCTGTAACAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGGGTAACCCCCAGTCAGGACAGCGACACCCTCTTTCTGGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTGACAATGTGGAGGATCTGACTTTAGTAGAAGATAGTAATAATGAGGGAATGAACCGTGGATTTGCGTTTTTAGAATTTTCTTCTCGGTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCAGGTGATGAGATTATGGCGCAGGTTAAAACTGTTTTTATTGATGGTCTGCCTCCCTCATGGGATGAGGATCGTGTACGGGGTCTTCTTAAGGGATATGGAGAGATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCTAAGAGGAAGGACTTTGGATTTGTTACATTTGATACCCATGATGCTGCTGTGACATGTGCCAAAAGCATTAATAATTCTGAGATAGGTGAAGGAGACAGTAAGGCAAAAGTTAGGGCAAGATTATCAAGACCGCTTCAGAGAGGCCATGGAAAACATGGCGGTCGTGGGGACTTTCGGTCTGGTCGTGCTTCTGGAAGAGTCACAAGGCCTTCATGGAGTCGTCCAGCACCTCGTGGTTTACCTGCCCGTGGGGTAAGGGGCATTAGTAGTCGTGTTCCTCCAGTCAGGCCTGTTAGTGTGAGAGATAGACGTCCAGCAATGCCAATGACAGTAAGAGCTAGGCCAATGGCTCCTCCGGCTCGATCCTATGACAGGAGACCTGCTGTTCCTGCATACCCAAAAGGTAGCATGAAGAGAGATTATGGTCGGCGTGAAGATTTGCCACCACCAAGAAGTAGAGTAGCTGTAGATTATAGCCCTCGGGTGGCCTCTGAGAGACGTCCTTCTTACAGGGATTATCCTGCCCGAGGCCCTACCTACTCTGACCTCCCGAGAAGTACTTCATCTCGTGTGGCACCTAGGAGGGGTTATGTGGATGATGGCTATGGTCAAAGGTTTGAGAGGCCGCCTCCTCCTCCTCCTCCTCCTCATCCAAGTTACCGTGAAGGACGCCCTCGTGACTATGATACTCTCTCTGGCTCAAAACGCCAATATGCTGCCATAGATGATGTTCCACCACGATATGCAGACAGTGGTGCTCGCCAATCTAGAGCCCGATTGGACTATGACTATGGTGGTAGTACTTCACAATATGGAGATGCTTATGGGGATAGACTTGGAAGATCTAGTGTGGGCTATAGTGGTGGCCGGAGTTCTATGTCAAGTCAAGACTCACATGGGATGTATAGCAGTCGTCAAGGCATGAGTTACAGTGGAGGTTCTTTTGGCAGCAGCGATGTTGGTGGTATGTACTCCTCCAGTTATGGTGGTGATTACATGCCTCGTGGAAATGATGTTGGTGGTGGCTCATACTCATCACTATATCCTGGCAGAGGTGTGGGTGGTAGTGGCAGTTACATGGGTGGTAGTGGGTCTGGGTCTTATTATTAA 2442 0.4726 MPPRTVKRGAAASARRGGRGGRGTPNKAAQNQQNLDSVQEVVKHEEKQVVEDKPVVEEKPVVEEKPVEEKQVGIDMNQMAFDINQVASEAEEANLVTNGSAAVKNDEEEVKESIDEYEKDERLDLEDNDPEYETEEYGGVDYDEKEIEQDDVQEVGDEMEEEPDENLGEEEGDMVEEEVEDVHEELEGEEDDEHRGEEHEREHDHGQNADVEEEEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRGLLKGYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGGRGDFRSGRASGRVTRPSWSRPAPRGLPARGVRGISSRVPPVRPVSVRDRRPAMPMTVRARPMAPPARSYDRRPAVPAYPKGSMKRDYGRREDLPPPRSRVAVDYSPRVASERRPSYRDYPARGPTYSDLPRSTSSRVAPRRGYVDDGYGQRFERPPPPPPPPHPSYREGRPRDYDTLSGSKRQYAAIDDVPPRYADSGARQSRARLDYDYGGSTSQYGDAYGDRLGRSSVGYSGGRSSMSSQDSHGMYSSRQGMSYSGGSFGSSDVGGMYSSSYGGDYMPRGNDVGGGSYSSLYPGRGVGGSGSYMGGSGSGSYY 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3772g00067 813 Gene3D - 168 304 IPR012677 -
Pral3772g00067 813 MobiDBLite consensus disorder prediction 98 223 - -
Pral3772g00067 813 MobiDBLite consensus disorder prediction 730 749 - -
Pral3772g00067 813 Gene3D - 309 392 IPR012677 -
Pral3772g00067 813 FunFam RNA recognition water-stress protein1 396 517 - -
Pral3772g00067 813 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 22 813 - -
Pral3772g00067 813 FunFam Heterogeneous nuclear ribonucleoprotein Q 310 392 - -
Pral3772g00067 813 Gene3D - 396 514 IPR012677 -
Pral3772g00067 813 MobiDBLite consensus disorder prediction 104 118 - -
Pral3772g00067 813 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Pral3772g00067 813 SUPERFAMILY RNA-binding domain, RBD 225 307 IPR035979 GO:0003676
Pral3772g00067 813 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 406 488 IPR000504 GO:0003723
Pral3772g00067 813 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 158 309 - -
Pral3772g00067 813 SUPERFAMILY RNA-binding domain, RBD 308 473 IPR035979 GO:0003676
Pral3772g00067 813 CDD RRM_SF 231 302 - -
Pral3772g00067 813 SMART rrm1_1 407 482 IPR000504 GO:0003723
Pral3772g00067 813 SMART rrm1_1 230 303 IPR000504 GO:0003723
Pral3772g00067 813 SMART rrm1_1 310 389 IPR000504 GO:0003723
Pral3772g00067 813 MobiDBLite consensus disorder prediction 485 675 - -
Pral3772g00067 813 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 299 IPR000504 GO:0003723
Pral3772g00067 813 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 408 473 IPR000504 GO:0003723
Pral3772g00067 813 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 377 IPR000504 GO:0003723
Pral3772g00067 813 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 393 IPR000504 GO:0003723
Pral3772g00067 813 MobiDBLite consensus disorder prediction 194 223 - -
Pral3772g00067 813 MobiDBLite consensus disorder prediction 119 193 - -
Pral3772g00067 813 Coils Coil 28 48 - -
Pral3772g00067 813 CDD RRM_SF 408 473 - -
Pral3772g00067 813 Coils Coil 100 123 - -
Pral3772g00067 813 Coils Coil 172 192 - -
Pral3772g00067 813 CDD RRM_SF 311 389 - -
Pral3772g00067 813 Coils Coil 142 162 - -
Pral3772g00067 813 MobiDBLite consensus disorder prediction 581 595 - -
Pral3772g00067 813 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3772g00067 Pral-Chr3772 1330310 1336324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3772g00067 224 487 Eukaryotic Initiation Factors Gene Family AT1G49760 23.746 3.65e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3772g00067 - - gmx:100779340 1020.38