Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3772g00039 ATGGTGGATAGGATCCATAGTGGTCAAGGTGGTACACCAGTGTCCAACCCTGCTGATGAGGTTCAACTACCGGCTCAAACTCAAGAAAATTTCATTTTGTGGCCAAAGAGACTTGTTGGAAAGCCGGTAGTGACAAAGAAGGCGATAGCGAAGAAGGCAACAAAGAGTGCATCAAATTTTGTCATCCTGCCTCTTCCTAATGACAGTGCGGTTATGTATTTCAATTTGGCGCTTCTTCATTCCATGGTAGCAAACATAGAGAAACCCCTTACTTTCAAGATGCCGTTGGAGATTGCGGCTATTGATGTTACCATTAGATTTCTTATGAATATGGATGTTGGGGATTTCATGGAGATGGTTGATCTGGAGGAGTCGATGGAAAGAATTAGAATGATTCCTGCCACTGAAGAAGCGATTCAGTCTCTCAACAAAGTCGAACTTGGAGAAAATACTGATCATCAGTGCTGCATTTGTTTCGAAGATTTTAATGATGCTGATGATGATGCTGAGATTTCAACAATGCCATGTCATCATAATTTTCACAAAAATTGTATTGCTCAGTGGTTAAAAACAAGTCATGTATGCCCTTTATGCCGGTATCAAATGCCTGTAGACAACAATTCTTAG 627 0.4083 MVDRIHSGQGGTPVSNPADEVQLPAQTQENFILWPKRLVGKPVVTKKAIAKKATKSASNFVILPLPNDSAVMYFNLALLHSMVANIEKPLTFKMPLEIAAIDVTIRFLMNMDVGDFMEMVDLEESMERIRMIPATEEAIQSLNKVELGENTDHQCCICFEDFNDADDDAEISTMPCHHNFHKNCIAQWLKTSHVCPLCRYQMPVDNNS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3772g00039 208 Pfam Ring finger domain 154 199 IPR001841 -
Pral3772g00039 208 SUPERFAMILY RING/U-box 144 204 - -
Pral3772g00039 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 205 IPR013083 -
Pral3772g00039 208 ProSiteProfiles Zinc finger RING-type profile. 155 199 IPR001841 -
Pral3772g00039 208 SMART ring_2 155 198 IPR001841 -
Pral3772g00039 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 203 - -
Pral3772g00039 208 SMART ringv_2 154 199 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3772g00039 Pral-Chr3772 899760 903664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3772g00039 122 207 C3H Transcription Factor Family AT1G26800 38.372 1.41e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3772g00039 - - pcin:129286350 105.916