Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3772g00007 ATGAGTCAGTGTGTTCCTAGCTGGGATTTGGATGAAAATCCGACAGCCCCCAGAGTCTCTCTTCGTTCAAATCCCAACTCCACAGCTCCTGATGTTCCCATGTTAGACTACGAAGTTGCGGAGCTGACATGGGAAAATGGACAGCTTTCCATGCATGGTTTGGGTCTGCCAAGGGTACCGGAGAAACCCAACTCCGCCGCCGGCAACGCCGCCAGGTCGGCAGCCCCTTCTTCCAAGTCCACTTGGGACAAGCCTCGTGCGAGTGGCACCTTGGAGTCCATAGTTAACCAAGCCACTCGGTTTCCCCACCGCAGCAAATCCGTCTTCGACGTCGGCGCCACTCAGGGAGATGACTTAGTGCCGTGGTTTGAACCCCAGAGAGCGGCGGCGGCTGCGGCTGCAATGGCTAACGCGGCGGCGGCGTCGAATACGATGACCATGGATGGCATGGTGCCTTGTTCAAACCGTACGGACGAGCAGCAGACGACGCAGGTTATGGACTCAGTGGCCGGTGGTGGTGGCGGCACGCTTAGCACGTGCGTGGTGGGCTGTTCCACACGTGTGGGGTCCTGTAGTGGCCCCACCAATCAAGAGGACGAGGCGCTCTTGGCGGCGAAACGCGCCAGAGTGGCGCGTGTGCCGGTGGCTCCCGAGTGGAGTGGCAGAGATCCAAGTGTGAGTGGAAGCGCCACGTTTGGAAGAGAAAGCCAGCACGTGACTTTGGACACGTGCGAGAAGGAATTGGGAATGGGTTTCATTTCCACGTCGATGGGTTCGCCGGAAAACACCAGCTCCGCCAAGCAGTGCACCAAAACAACCACCGCCGATGACCACGATTCTGTTGGCCATAGCAGACCACAGAATGAGACAGGTGATGAAGGGGACGAAAAGAAAGGAATAGGAAAATCCCCAGTGTCCACTAAAAGAAGCAGGGCGGCAGCTATCCACAACCAATCTGAGAGGAAAAGGAGAGATAAGATAAACCAGAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACAGATAAAGCTTCAATGCTGGATGAGGTGATAGAGTATCTAAAGCAATTGCAAGCACAAGTGCAAATGATGAGTAAAATGAATATGTCAGCCATGATGTTACCAATGGCCATGCAACAGCAGCTTCAGATGTCCATGATGCCTCCTCCCATGGGCATGGGCATGGGTATGGGTATGGGCATGGGCATGGGTTTGGGCATGAGAATGGGCATTGACATGAATGCCATGGGTGGTGCTAATAACATTGCTGGCATCCCTCCTGCTGCTGTCTTCCATCATCCTCATTCATTCATGCCTATGGCTTCATGGGATGCATCATCGCTTGGCTCTGATCGACTCCAAGCAGCTCCACCAACTACAGTGATGCCTGACCCATTATCCACATTTTTCGCAGGCCAATCACAGCCTATGAACATGGATGCATACAATAGGATGGTTGCCATGTATCAGCAGCTATACCAACCCGCAGCTTCTACTTCCAAGAGCTGA 1518 0.5375 MSQCVPSWDLDENPTAPRVSLRSNPNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPEKPNSAAGNAARSAAPSSKSTWDKPRASGTLESIVNQATRFPHRSKSVFDVGATQGDDLVPWFEPQRAAAAAAAMANAAAASNTMTMDGMVPCSNRTDEQQTTQVMDSVAGGGGGTLSTCVVGCSTRVGSCSGPTNQEDEALLAAKRARVARVPVAPEWSGRDPSVSGSATFGRESQHVTLDTCEKELGMGFISTSMGSPENTSSAKQCTKTTTADDHDSVGHSRPQNETGDEGDEKKGIGKSPVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMSKMNMSAMMLPMAMQQQLQMSMMPPPMGMGMGMGMGMGMGLGMRMGIDMNAMGGANNIAGIPPAAVFHHPHSFMPMASWDASSLGSDRLQAAPPTTVMPDPLSTFFAGQSQPMNMDAYNRMVAMYQQLYQPAASTSKS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3772g00007 505 MobiDBLite consensus disorder prediction 1 32 - -
Pral3772g00007 505 MobiDBLite consensus disorder prediction 252 329 - -
Pral3772g00007 505 FunFam transcription factor UNE10 isoform X1 306 371 - -
Pral3772g00007 505 MobiDBLite consensus disorder prediction 70 86 - -
Pral3772g00007 505 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 503 IPR031066 -
Pral3772g00007 505 MobiDBLite consensus disorder prediction 314 329 - -
Pral3772g00007 505 Pfam Helix-loop-helix DNA-binding domain 316 361 IPR011598 GO:0046983
Pral3772g00007 505 CDD bHLH_AtPIF_like 311 372 IPR047265 -
Pral3772g00007 505 SMART finulus 317 366 IPR011598 GO:0046983
Pral3772g00007 505 MobiDBLite consensus disorder prediction 272 303 - -
Pral3772g00007 505 MobiDBLite consensus disorder prediction 58 86 - -
Pral3772g00007 505 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 384 IPR036638 GO:0046983
Pral3772g00007 505 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983
Pral3772g00007 505 MobiDBLite consensus disorder prediction 255 271 - -
Pral3772g00007 505 Coils Coil 317 337 - -
Pral3772g00007 505 Gene3D - 306 373 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3772g00007 Pral-Chr3772 111052 120305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3772g00007 1 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 49.493 9.95e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3772g00007 HLH 7.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3772g00007 - - jcu:105643171 531.946