Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3772g00006 ATGAGTCAGTGTGTTCCTAGCTGGGATTTGGATGAAAATCCGACAGCCCCCAGAGTCTCTCTTCGTTCAAATCCCAACTCCACAGCTCCTGATGTTCCCATGTTAGACTACGAAGTTGCGGAGCTGACATGGGAAAATGGACAGCTTTCCATGCATGGTTTGGGTCTGCCAAGGGTACCGGAGAAACCCAACTCCGCCGCCGGCAACGCCGCCAGGTCGGCAGCCCCTTCTTCCAAGTCCACTTGGGACAAGCCTCGTGCGAGTGGCACCTTGGAGTCCATAGTTAACCAAGCCACTCGGTTTCCCCACCGCAGCAAATCCGTCTTCGACGTCGGCGCCACTCAGGGAGATGACTTAGTGCCGTGGTTTGAACCCCAGAGAGCGGCGGCGGCTGCGGCTGCAATGGCTAACGCGGCGGCGGCGTCGAATACGATGACCATGGATGGCATGGTGCCTTGTTCAAACCGTACGGACGAGCAGCAGACGACGCGTGGCGGCACGCTTAGCACGTGCGTGGTGGGCTGTTCCACACGTGTGGGGTCCTGTAGTGGCCCCACCAATCAAGAGGACGAGGCGCTCTTGGCGGCGAAACGCGCCAGAGTGGCGCGTGTGCCGGTGGCTCCCGAGTGGAGTGGCAGAGATCCAAGTGTGAGTGGAAGCGCCACGTTTGGAAGAGAAAGCCAGCACGTGACTTTGGACACGTGCGAGAAGGAATTGGGAATGGGTTTCATTTCCACGTCGATGGGTTCGCCGGAAAACACCAGCTCCGCCAAGCAGTGCACCAAAACAACCACCGCCGATGACCACGATTCTGTTGGCCATAGCAGACCACAGAATGAGACAGGTGATGAAGGGGACGAAAAGAAAGGAATAGGAAAATCCCCAGTGTCCACTAAAAGAAGCAGGGCGGCAGCTATCCACAACCAATCTGAGAGGAAAAGGAGAGATAAGATAAACCAGAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACAGATAAAGCTTCAATGCTGGATGAGGTGATAGAGTATCTAAAGCAATTGCAAGCACAAGTGCAAATGATGAGTAAAATGAATATGTCAGCCATGATGTTACCAATGGCCATGCAACAGCAGCTTCAGATGTCCATGATGCCTCCTCCCATGGGCATGGGCATGGGTATGGGTATGGGCATGGGCATGGGTTTGGGCATGAGAATGGGCATTGACATGAATGCCATGGGTGGTGCTAATAACATTGCTGGCATCCCTCCTGCTGCTGTCTTCCATCATCCTCATTCATTCATGCCTATGGCTTCATGGGATGCATCATCGCTTGGCTCTGATCGACTCCAAGCAGCTCCACCAACTACAGTGATGCCTGACCCATTATCCACATTTTTCGCAGGCCAATCACAGCCTATGAACATGGATGCATACAATAGGATGGTTGCCATGTATCAGCAGCTATACCAACCCGCAGCTTCTACTTCCAAGAGCTGA 1491 0.5366 MSQCVPSWDLDENPTAPRVSLRSNPNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPEKPNSAAGNAARSAAPSSKSTWDKPRASGTLESIVNQATRFPHRSKSVFDVGATQGDDLVPWFEPQRAAAAAAAMANAAAASNTMTMDGMVPCSNRTDEQQTTRGGTLSTCVVGCSTRVGSCSGPTNQEDEALLAAKRARVARVPVAPEWSGRDPSVSGSATFGRESQHVTLDTCEKELGMGFISTSMGSPENTSSAKQCTKTTTADDHDSVGHSRPQNETGDEGDEKKGIGKSPVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMSKMNMSAMMLPMAMQQQLQMSMMPPPMGMGMGMGMGMGMGLGMRMGIDMNAMGGANNIAGIPPAAVFHHPHSFMPMASWDASSLGSDRLQAAPPTTVMPDPLSTFFAGQSQPMNMDAYNRMVAMYQQLYQPAASTSKS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3772g00006 496 MobiDBLite consensus disorder prediction 246 262 - -
Pral3772g00006 496 MobiDBLite consensus disorder prediction 305 320 - -
Pral3772g00006 496 MobiDBLite consensus disorder prediction 1 32 - -
Pral3772g00006 496 FunFam transcription factor UNE10 isoform X1 297 362 - -
Pral3772g00006 496 MobiDBLite consensus disorder prediction 70 86 - -
Pral3772g00006 496 Pfam Helix-loop-helix DNA-binding domain 307 352 IPR011598 GO:0046983
Pral3772g00006 496 CDD bHLH_AtPIF_like 302 363 IPR047265 -
Pral3772g00006 496 SMART finulus 308 357 IPR011598 GO:0046983
Pral3772g00006 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Pral3772g00006 496 Coils Coil 308 328 - -
Pral3772g00006 496 Gene3D - 297 364 IPR036638 GO:0046983
Pral3772g00006 496 MobiDBLite consensus disorder prediction 243 320 - -
Pral3772g00006 496 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 494 IPR031066 -
Pral3772g00006 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 375 IPR036638 GO:0046983
Pral3772g00006 496 MobiDBLite consensus disorder prediction 58 86 - -
Pral3772g00006 496 MobiDBLite consensus disorder prediction 263 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3772g00006 Pral-Chr3772 111051 120177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3772g00006 1 480 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.413 6.74e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3772g00006 HLH 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3772g00006 - - jcu:105643171 527.709