LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3772g00006	ATGAGTCAGTGTGTTCCTAGCTGGGATTTGGATGAAAATCCGACAGCCCCCAGAGTCTCTCTTCGTTCAAATCCCAACTCCACAGCTCCTGATGTTCCCATGTTAGACTACGAAGTTGCGGAGCTGACATGGGAAAATGGACAGCTTTCCATGCATGGTTTGGGTCTGCCAAGGGTACCGGAGAAACCCAACTCCGCCGCCGGCAACGCCGCCAGGTCGGCAGCCCCTTCTTCCAAGTCCACTTGGGACAAGCCTCGTGCGAGTGGCACCTTGGAGTCCATAGTTAACCAAGCCACTCGGTTTCCCCACCGCAGCAAATCCGTCTTCGACGTCGGCGCCACTCAGGGAGATGACTTAGTGCCGTGGTTTGAACCCCAGAGAGCGGCGGCGGCTGCGGCTGCAATGGCTAACGCGGCGGCGGCGTCGAATACGATGACCATGGATGGCATGGTGCCTTGTTCAAACCGTACGGACGAGCAGCAGACGACGCGTGGCGGCACGCTTAGCACGTGCGTGGTGGGCTGTTCCACACGTGTGGGGTCCTGTAGTGGCCCCACCAATCAAGAGGACGAGGCGCTCTTGGCGGCGAAACGCGCCAGAGTGGCGCGTGTGCCGGTGGCTCCCGAGTGGAGTGGCAGAGATCCAAGTGTGAGTGGAAGCGCCACGTTTGGAAGAGAAAGCCAGCACGTGACTTTGGACACGTGCGAGAAGGAATTGGGAATGGGTTTCATTTCCACGTCGATGGGTTCGCCGGAAAACACCAGCTCCGCCAAGCAGTGCACCAAAACAACCACCGCCGATGACCACGATTCTGTTGGCCATAGCAGACCACAGAATGAGACAGGTGATGAAGGGGACGAAAAGAAAGGAATAGGAAAATCCCCAGTGTCCACTAAAAGAAGCAGGGCGGCAGCTATCCACAACCAATCTGAGAGGAAAAGGAGAGATAAGATAAACCAGAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACAGATAAAGCTTCAATGCTGGATGAGGTGATAGAGTATCTAAAGCAATTGCAAGCACAAGTGCAAATGATGAGTAAAATGAATATGTCAGCCATGATGTTACCAATGGCCATGCAACAGCAGCTTCAGATGTCCATGATGCCTCCTCCCATGGGCATGGGCATGGGTATGGGTATGGGCATGGGCATGGGTTTGGGCATGAGAATGGGCATTGACATGAATGCCATGGGTGGTGCTAATAACATTGCTGGCATCCCTCCTGCTGCTGTCTTCCATCATCCTCATTCATTCATGCCTATGGCTTCATGGGATGCATCATCGCTTGGCTCTGATCGACTCCAAGCAGCTCCACCAACTACAGTGATGCCTGACCCATTATCCACATTTTTCGCAGGCCAATCACAGCCTATGAACATGGATGCATACAATAGGATGGTTGCCATGTATCAGCAGCTATACCAACCCGCAGCTTCTACTTCCAAGAGCTGA	1491	0.5366	MSQCVPSWDLDENPTAPRVSLRSNPNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPEKPNSAAGNAARSAAPSSKSTWDKPRASGTLESIVNQATRFPHRSKSVFDVGATQGDDLVPWFEPQRAAAAAAAMANAAAASNTMTMDGMVPCSNRTDEQQTTRGGTLSTCVVGCSTRVGSCSGPTNQEDEALLAAKRARVARVPVAPEWSGRDPSVSGSATFGRESQHVTLDTCEKELGMGFISTSMGSPENTSSAKQCTKTTTADDHDSVGHSRPQNETGDEGDEKKGIGKSPVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMSKMNMSAMMLPMAMQQQLQMSMMPPPMGMGMGMGMGMGMGLGMRMGIDMNAMGGANNIAGIPPAAVFHHPHSFMPMASWDASSLGSDRLQAAPPTTVMPDPLSTFFAGQSQPMNMDAYNRMVAMYQQLYQPAASTSKS	496

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pral3772g00006	496	MobiDBLite	consensus disorder prediction	246	262	-	-
Pral3772g00006	496	MobiDBLite	consensus disorder prediction	305	320	-	-
Pral3772g00006	496	MobiDBLite	consensus disorder prediction	1	32	-	-
Pral3772g00006	496	FunFam	transcription factor UNE10 isoform X1	297	362	-	-
Pral3772g00006	496	MobiDBLite	consensus disorder prediction	70	86	-	-
Pral3772g00006	496	Pfam	Helix-loop-helix DNA-binding domain	307	352	IPR011598	GO:0046983
Pral3772g00006	496	CDD	bHLH_AtPIF_like	302	363	IPR047265	-
Pral3772g00006	496	SMART	finulus	308	357	IPR011598	GO:0046983
Pral3772g00006	496	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	302	351	IPR011598	GO:0046983
Pral3772g00006	496	Coils	Coil	308	328	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3772g00006	Pral-Chr3772	111051	120177	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3772g00006	1	480	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G00050	50.413	6.74e-104	314

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Pral3772g00006		HLH	7.8e-14	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3772g00006	-		-	jcu:105643171	527.709

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