Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3743g00016 ATGGGATCTTCAAGAATAGGAAGCGAGGAACAGAATGAATGGTACTTCTTCAGCCACAAAGATAAGAAGTATCCGACAGGAACACGAACGAACAGAGCCACAAAAGCAGGATTCTGGAAGGCGACTGGAAGAGATAAAGCGATCTATTCAAGGCATTTTCTGATTGGTATGAGAAAGACTCTTGTGTTTTACAAAGGACGAGCCCCTAATGGACAGAAATCTGACTGGATCATGCATGAGTATCGCCTTGAAACTAATGAAAATGCAACCCCTCAGGAAGAAGGGTGGGTGGTGTGTAGAGTGTTCAAGAAGCGAATGACGACAATGAGAAAGGTAGGAGAATATGAATCACCATGTTGGTACGAGGAGGCAGCCTCGTTCATGCAAGAACTTGATCAATCTCCTCCAAGGCGTAATAGTAATAACAATATTTCTCCACCTTACTACTCCTGCAAGCAAGAGTTTGATCAATTCCAATACAACATCAATAATCTTCCCCACGACGCTTTCCTCCAGCTTCCTCAGCTTGAAAGCCCTAAACTCCCCATCTTCAGCAGCAACGCCTTCGACCATCATCAATATCAACACTGCAGAAGCAACCATGGAACCGCCGCCTCAGCCGCCGCCACGACGGCGTCGTTTTACGATCAACCAGTTGTTTTGGATCATAATGATCAAGCGGTAATTACTGATTGGAGGGTGTTTGATAAATTTGTTGCTTCTCAGCTGAGTCAAGATCATCACCAGCAACAACATGGTTCTTCCAAGGAAACCAGTCATGCCGATGACGTTGTTGCCGTCACTGAACAAGTTCCTATGCTGGAAAATCAGTCAACAACAACGAGGTCGCCGTCGGAGTTGGAGCAGGAATTTGCATCGGCGTCCACCACCACCACCTGCAACATTGAACTATGGAAGTGA 921 0.4593 MGSSRIGSEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSRHFLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENATPQEEGWVVCRVFKKRMTTMRKVGEYESPCWYEEAASFMQELDQSPPRRNSNNNISPPYYSCKQEFDQFQYNINNLPHDAFLQLPQLESPKLPIFSSNAFDHHQYQHCRSNHGTAASAAATTASFYDQPVVLDHNDQAVITDWRVFDKFVASQLSQDHHQQQHGSSKETSHADDVVAVTEQVPMLENQSTTTRSPSELEQEFASASTTTTCNIELWK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3743g00016 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 244 - -
Pral3743g00016 306 Gene3D NAC domain 2 108 IPR036093 GO:0003677|GO:0006355
Pral3743g00016 306 MobiDBLite consensus disorder prediction 271 298 - -
Pral3743g00016 306 ProSiteProfiles NAC domain profile. 1 104 IPR003441 GO:0003677|GO:0006355
Pral3743g00016 306 SUPERFAMILY NAC domain 10 104 IPR036093 GO:0003677|GO:0006355
Pral3743g00016 306 MobiDBLite consensus disorder prediction 270 298 - -
Pral3743g00016 306 Pfam No apical meristem (NAM) protein 9 83 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3743g00016 Pral-Chr3743 159899 162341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3743g00016 5 304 NAC Transcription Factor Family AT1G62700 47.688 8.19e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral3743g00016 NAM 9.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3743g00016 - - tcc:18606319 337.421