Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3730g00009 ATGGCCATTGCTTTCTCCGCCCTGGCTTCTTTTGCTATTGATGGAAGCTGGCATGATGCTCATGCAACCTTCTATGGTGACATGTCGGGAGGCGAAACCATGCAAGGAGCTTGTGGTTATGGAGACCTCTTCAAGCAAGGCTATGGCCTGGAAACGGCAGCCCTAAGCACAGCTCTCTTCAACAATGGTCTCACCTGCGGCGCCTGCTTCGAACTCGAGTGCGTCAACGACCCGCAATGGTGCATCCCCGGCGCCGGCACCATCAAAATTACGGCCACCAACTTCTGTCCGCCCAACCACACTCCTCCGGACGTCAACCACTGGTGCAACCCTCCCCAGCAACACTTCGACCTCTCCATGGCCATGTTCACCAAGCTCGCTCCCTACAAGGCCGGCATCATCCCGGTTCGCTACCGCCGTGTCGCCTGCGCCAAATCCGGCGGCGTCAAGTTCGAGCTCAAGGGCAACCCTTACTGGATAACAACGCTGTTTTTCAATGTGGCGAACGCCGGCGACGTCACCGACGCGAAGATCAGGGCAGGTAATGGCGGCGGCGGGTGGATTCAGATGTCGAGGAATTGGGGTCAGGTTTGGCAGACAGGGACGAACCTGATGGGACAGAGTTTGTCGTTTAAGGTTACTACGAGTGATGGGAAGATGTTGGAGTTTGATAATGTTGTGCCATCGAATTGGCAATTTGGTCAGACTTTTGAGGGAAATCAGAACTTTTAA 732 0.5492 MAIAFSALASFAIDGSWHDAHATFYGDMSGGETMQGACGYGDLFKQGYGLETAALSTALFNNGLTCGACFELECVNDPQWCIPGAGTIKITATNFCPPNHTPPDVNHWCNPPQQHFDLSMAMFTKLAPYKAGIIPVRYRRVACAKSGGVKFELKGNPYWITTLFFNVANAGDVTDAKIRAGNGGGGWIQMSRNWGQVWQTGTNLMGQSLSFKVTTSDGKMLEFDNVVPSNWQFGQTFEGNQNF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3730g00009 243 PRINTS Expansin/Lol pI family signature 16 31 IPR007118 GO:0005576
Pral3730g00009 243 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Pral3730g00009 243 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Pral3730g00009 243 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Pral3730g00009 243 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Pral3730g00009 243 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Pral3730g00009 243 Gene3D - 3 144 IPR036908 -
Pral3730g00009 243 Gene3D - 148 243 IPR036749 -
Pral3730g00009 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 35 148 IPR007112 -
Pral3730g00009 243 SUPERFAMILY PHL pollen allergen 145 239 IPR036749 -
Pral3730g00009 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 239 IPR007117 -
Pral3730g00009 243 SUPERFAMILY Barwin-like endoglucanases 16 166 IPR036908 -
Pral3730g00009 243 PANTHER EXPANSIN-A15 13 241 IPR002963 GO:0009664
Pral3730g00009 243 Pfam Lytic transglycolase 52 138 IPR009009 -
Pral3730g00009 243 PRINTS Expansin signature 88 98 IPR002963 GO:0009664
Pral3730g00009 243 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Pral3730g00009 243 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Pral3730g00009 243 PRINTS Expansin signature 47 61 IPR002963 GO:0009664
Pral3730g00009 243 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Pral3730g00009 243 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Pral3730g00009 243 PRINTS Expansin signature 74 85 IPR002963 GO:0009664
Pral3730g00009 243 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Pral3730g00009 243 PRINTS Expansin signature 225 241 IPR002963 GO:0009664
Pral3730g00009 243 CDD DPBB_EXPA_N 17 143 - -
Pral3730g00009 243 SMART dpbb_1 52 138 IPR007112 -
Pral3730g00009 243 Pfam Expansin C-terminal domain 149 228 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3730g00009 Pral-Chr3730 118359 120271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3730g00009 13 243 Expansin Gene Family AT5G39300 64.502 2.56e-113 324