Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral372g00002 ATGGTGATCGGAGAACTAGCTTGCTTGGCCCCGAACTTCCAGAGTTCTCAGTTGAACTTGCCGGATAATTTAACCATCGCATTGCCCGTTGATGGTTTAGCCATCAACTTAAATGGCAATGCCGGTGATTGTGACTATCCACCTTCCATCGATTCCTCCACCGCTCTCCACCCTTTTCTTTCCAGTGATCTGACTCCCATTGATCTGGATTCGCTCTGCGAAGAATTCGACTCTTCTTTTGATGCTTTTTCCAGTGATCATTTCCGCATCTTCGAGTTTAAGATCCGCAAATGCGCGCGTTCCCGGTCACATGACTGGACGGAGTGTCCGTACGCCCATCCCGGCGAAAAGGCTCGCCGGAGAGACCCTCGGAAATATCACTATTCCGGCACCTCATGCCCCGAGTTTCGCAGAGGTAACTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTGTTTGAATGCTGGCTTCACCCCTCTCGTTACAGAACCCAGTTCTGCAAGGACGGAACAAACTGTCGCCGCCGAGTGTGCTTCTTCGCTCACACTCCGGAACAATTGCGGTTCCTTGCTAGTGGCTCAGGCGAATCATCGGAGGGCTCGCCGATTTGTCACGCTTCCTTCGTTTCATCGCCTACATCAGTTCTCCAGCCTTCGCCGATCTCTTCATTGGCCGAGTCTCCGCCCACATCGCCCGGAAATCCCCGACACGGCTGGAGTGAAGTAAGCGCCTCAATGTGTGATGTACAGGGTGATAAGTCGCCTTCAACTCGTGCTCCTCATGTGCGCGGTGCGTTCGGTTCGCCTTATGGGCATGGTATCCATATGGGTTTGGTGTTTGGTTCACCCCGCGGTTCGAACCTCCGACCCGGGTTTTTTAGCCTTCCTTCGACTCCGAATCGTACGGTAACGAAATCTGGGCTTGATACTCTGGACGTGTGGGATAAAAGCCGCCAAGAAGAACCTGCCATGGAAAGGGTCGAGTCGGGAAGAGAACTGAGAGCCAAAATGTACGCTAAGCTCTGTAAGGAGAATTCATTTGGGCGAAGCGACACACAGCTTTCGGGAATGTTCTGA 1080 0.5278 MVIGELACLAPNFQSSQLNLPDNLTIALPVDGLAINLNGNAGDCDYPPSIDSSTALHPFLSSDLTPIDLDSLCEEFDSSFDAFSSDHFRIFEFKIRKCARSRSHDWTECPYAHPGEKARRRDPRKYHYSGTSCPEFRRGNCKKGDSCEFAHGVFECWLHPSRYRTQFCKDGTNCRRRVCFFAHTPEQLRFLASGSGESSEGSPICHASFVSSPTSVLQPSPISSLAESPPTSPGNPRHGWSEVSASMCDVQGDKSPSTRAPHVRGAFGSPYGHGIHMGLVFGSPRGSNLRPGFFSLPSTPNRTVTKSGLDTLDVWDKSRQEEPAMERVESGRELRAKMYAKLCKENSFGRSDTQLSGMF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral372g00002 359 FunFam Zinc finger CCCH domain-containing protein 66 85 153 - -
Pral372g00002 359 Gene3D - 127 190 - -
Pral372g00002 359 ProSiteProfiles Zinc finger C3H1-type profile. 128 154 IPR000571 GO:0046872
Pral372g00002 359 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Pral372g00002 359 SMART c3hfinal6 127 153 IPR000571 GO:0046872
Pral372g00002 359 MobiDBLite consensus disorder prediction 218 239 - -
Pral372g00002 359 PANTHER UNKEMPT FAMILY MEMBER 50 352 IPR045234 -
Pral372g00002 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 152 IPR000571 GO:0046872
Pral372g00002 359 MobiDBLite consensus disorder prediction 218 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral372g00002 Pral-Chr372 12956 14327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral372g00002 83 229 C2H2 Transcription Factor Family AT5G12850 57.823 9.97e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral372g00002 zf-CCCH 8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral372g00002 - - cave:132185767 390.963