LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3722g00156	ATGGTCGAAACCAGACGGGGCTCGTCGACTTCCAAGCGCTCTCTCTCTTCATCCTCCTCTTCCAACGTCAAACGACCCAAGGTGCCCAAGGCTTCTTCGTCAAGAAGTCCGCCGTCAGCGGAATTTCTTGGTCCTGTCAACGAACCTGGAAATGAATCCCGAGAGACGGAGCCAAGTCCGTCTAATCTTCCAGATACTGATTCGTTGAAAGGCATGGAGGATTGTGACGTGACGATATCTGACCAATCTCCCGCCATGGCCATCATCGAAGGCGAGGATTTGACATGGCCGCCGCCTCTGGGTGAAACCGCGGTGGATGGAGAGAAATCAAAGTTGGTTGGAGCGGCCGCCGATGCCCGGTCCAAGAAACGCCCAACGAAATCAACTAAAACGAGCCCGAAGGCTGCGTGGGGAAGGCTTCTTTCTCAGTGTTCGCAGAATCGACATTTGTCCTTGTGCAGTTCTCAATTCACTGTTGGTCATGGCCGTCAATGCAATTTATGGCTTAATGATCCAGCTGTCAGTAATGTTTTGTGCAAGCTGAAGCTCACCAAGCATGGAGGTTCGTCTGTTGGATTACTGGAAATCACAGGGGATAAAGGTGCCGTCCAAGTTAATGGCAGGAATTACAAAAAAAATTCCTGCCTGATCCTGAACGCAGGTGATGAGGTGGTCTTCAATTCTGACAAGAATGCTTATATATTTCAGCAGCTCACGAATAATAATGTCACTACTGCTGGGGTACCTTGTTCTAATGCTGAGGTTTCATTGCAGCCTCCTGGCCATGGGGTTGATACTGCTGACAAGGAGAATACCACCAATAATGGCAATCCAGCTGAAGTTTCTGCTGATAAAACTATTTATGCATCCTCTGCCGCTGCCAATGAAAATTGTAATCTTGACAGCATGAAAGTGGAGGATGGGATGTTGACAGGGGCCCCTCATGAGTTAAGGCCTTTGTTGTGCAAGCTTGCTGGCCTGTGCACTGAATTCAACTTGAATGATGGATTTTCCAAAATATCTGAACAAGGAGAATCAGTAGAACTCTTCAAGGATGTTGATCCTCAAACTAAATTAGTTTCCATCAGGCAGCAAGCATTCAAAAACATCTTACAACAAGGAATTCTCAATCCTGATAATATTGATGTGTCATTTGAAAACTTCCCATATTATATAAGTGATGCTACAAAAAGTGTTTTGATTACTTCTATGTACATTCACTTGAAGCGAAATGGTTTCACAAAGTCTGCTTCAAGCCTACCTTCACTGTGCCCCCGAATATTGTTATCTGGTCCTGCAGGTTCGGAAATTTATCAGGAAACCTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTAGGCTATTGATTGTGGATTCTTTTACCCTACCTGGTGGAACACCGTCAAAGGATTCTGATTCTATTAAACAAGGTTTAAAGCCTGCAAAAGCGTATGTGCTTGCAAAACACGCAGCGCAGATTGCCAAATTACAGCATAAGAAACCAACTTCAAGTGTCGATGCTGATCTTATCAATGGATCCTCGTTAAGTTCTCAGGTTAAGCTGAAGCAGGAGGTATCTACTGCATCATCCAAAGGTCCTATGCTTAAAACAGGTGACCGAGTAAAATTTGTTGGTAACCTTCCCTCTGCAGTCTCATTATTACAAAATTATCCTTCTAGGGGACCTAGGTATGGCTCCCGGGGCAAAGTTCTTCTTGCTTTTGAAGAAAATGAATCTTCAAAAATTGGGGTTAGATTCGACAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTATGTGAAGATGATCGTGGTTTTTTTTGTTCTGCTAATCATTTGCTACGGGTAGATAGCTCTGGAGGGGATGACACTAACAAGCTTGCTATTAATGAAATCTTTGAGGTTGTTTTTGATCAGAGTAGAAGTGGTGGGTTGGTGTTGTTCTTGAAGGATATAGAGAAGGCTGTGATTGGGAACTTAGAAGTCTTAAAAAGCAGGCTTGAAAGTTTGCCACGAAATGTAGTTGTAATTGGCTCACATACTCAGCTGGACAATCATAAGGACAAGACGCAGCCTGGTAGCCTTCTGTTCACAAAATTTGGGAGTGCTCAGGCAGCATTGCTTGATCTTGCTTTCCCGGATAACTTTAGCAGATTGCATGATAGGAGCAAGGAAAACCCAAAAGTGATGAAGCAACTTGGCCGCCTTTTCCCCAACAAAGTATCAATACAGCCGCCTCAGGATGAGGGCTTGCTTTCTTATTGGAAGCAGCAATTAGAACATGACATTGAAACTATGAAAGCTCAATCAAATATTGTCAGCATTCGCACAGTTCTCGACAAGATTGGATTTATTTGCCCTGATCTTGAAAATCTTTGCATTAAAGATCAAGCACTACCACCTGACAGTGTGGAGAAAGTTGTTGGCTGGGCATTAAGTTACCAGCTAATGCATTCATCTGAAGATTTAACTGAAGATTGTAAGATTGTGTTGTCTACTGAAAGCATTAAGTATGGGCTGAATATTCTACAGGACATACAAGGAGCAAGTAAGAACTTAAAGAAATCACTGAAGGATGTGATTACTGAGAATGAATTTGAGAAAAAATTGCTAGCTGATGTTATTCCTCCACGTGATATTGGGGTCAAATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACGCCTTAAATGAATTGGTCATGCTTCCCCTTCAGAGGCCTGAATTGTTTTCCAAAGGACAGTTGACAAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGTGTTGGAAAAACAATGCTCGCAAAGGCTGTAGCTACTGAGGCTGGAGCGAATTTCATCAACATCTCAATGTCCAGCATTACCTCAAAGTGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCAGTATTTTCTCTGGCAAGCAAAATTGCTCCGAGTGTTATTTTTGTTGATGAGGTTGATAGCATGTTAGGAAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTGAATTGGGATGGTCTATGCACAAAAGACAATGAGCGCATACTAGTACTTGCTGCTACAAATAGACCTTTTGATCTTGATGATGCTGTTATTAGGAGGCTTCCACGGAGATTGATGGTCAGTTTGCCAGACGCTCCGAACAGAGAAAAAATTCTTAAAGTAATTTTAGCAAAAGAAGATTTGGCACCTGATGTCGATTTGGAGGCAATATCAAACATGACTGATGGATATTCTGGGAGTGACCTAAAGAATCTCTGTGTCGCAGCAGCTCACTGTCCAATAAGAGAGATATTGAAGAAGGAAAAGAAGGAGAGAAGTTTGGCGCTGGCTGAGAGCAGACCTTTACCTCCATTGTATGGCAGTACTGACATTCGGCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTGTGCGCAAGCGTGTCGTCAGAGTCAGCAAATATGAACGAGCTGCTCCAATGGAATGAGCTCTACGGGGAAGGTGGATCCAGAAAAACGAGATCGTTGAGCTATTTTATGTAA	3564	0.4324	MVETRRGSSTSKRSLSSSSSSNVKRPKVPKASSSRSPPSAEFLGPVNEPGNESRETEPSPSNLPDTDSLKGMEDCDVTISDQSPAMAIIEGEDLTWPPPLGETAVDGEKSKLVGAAADARSKKRPTKSTKTSPKAAWGRLLSQCSQNRHLSLCSSQFTVGHGRQCNLWLNDPAVSNVLCKLKLTKHGGSSVGLLEITGDKGAVQVNGRNYKKNSCLILNAGDEVVFNSDKNAYIFQQLTNNNVTTAGVPCSNAEVSLQPPGHGVDTADKENTTNNGNPAEVSADKTIYASSAAANENCNLDSMKVEDGMLTGAPHELRPLLCKLAGLCTEFNLNDGFSKISEQGESVELFKDVDPQTKLVSIRQQAFKNILQQGILNPDNIDVSFENFPYYISDATKSVLITSMYIHLKRNGFTKSASSLPSLCPRILLSGPAGSEIYQETLSKALAKHFGARLLIVDSFTLPGGTPSKDSDSIKQGLKPAKAYVLAKHAAQIAKLQHKKPTSSVDADLINGSSLSSQVKLKQEVSTASSKGPMLKTGDRVKFVGNLPSAVSLLQNYPSRGPRYGSRGKVLLAFEENESSKIGVRFDKPIPDGNDLGGLCEDDRGFFCSANHLLRVDSSGGDDTNKLAINEIFEVVFDQSRSGGLVLFLKDIEKAVIGNLEVLKSRLESLPRNVVVIGSHTQLDNHKDKTQPGSLLFTKFGSAQAALLDLAFPDNFSRLHDRSKENPKVMKQLGRLFPNKVSIQPPQDEGLLSYWKQQLEHDIETMKAQSNIVSIRTVLDKIGFICPDLENLCIKDQALPPDSVEKVVGWALSYQLMHSSEDLTEDCKIVLSTESIKYGLNILQDIQGASKNLKKSLKDVITENEFEKKLLADVIPPRDIGVKFDDIGALENVKDALNELVMLPLQRPELFSKGQLTKPCKGILLFGPPGVGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLCTKDNERILVLAATNRPFDLDDAVIRRLPRRLMVSLPDAPNREKILKVILAKEDLAPDVDLEAISNMTDGYSGSDLKNLCVAAAHCPIREILKKEKKERSLALAESRPLPPLYGSTDIRPLKMEDFRYAHEQVCASVSSESANMNELLQWNELYGEGGSRKTRSLSYFM	1187

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3722g00156	1187	SUPERFAMILY	SMAD/FHA domain	137	235	IPR008984	GO:0005515
	Pral3722g00156	1187	Pfam	AAA+ lid domain	1076	1112	IPR041569	-
	Pral3722g00156	1187	SMART	AAA_5	919	1056	IPR003593	GO:0016887
	Pral3722g00156	1187	Gene3D	-	524	626	IPR047008	-
	Pral3722g00156	1187	MobiDBLite	consensus disorder prediction	261	280	-	-
	Pral3722g00156	1187	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	881	1057	-	-
	Pral3722g00156	1187	MobiDBLite	consensus disorder prediction	114	134	-	-
	Pral3722g00156	1187	Gene3D	-	1055	1149	-	-
	Pral3722g00156	1187	Gene3D	-	881	1161	IPR027417	-
	Pral3722g00156	1187	Pfam	ATPase family associated with various cellular activities (AAA)	923	1052	IPR003959	GO:0005524\|GO:0016887
	Pral3722g00156	1187	MobiDBLite	consensus disorder prediction	52	66	-	-
	Pral3722g00156	1187	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	882	1159	IPR027417	-
	Pral3722g00156	1187	ProSitePatterns	AAA-protein family signature.	1026	1045	IPR003960	GO:0005524\|GO:0016887
	Pral3722g00156	1187	Gene3D	-	136	245	-	-
	Pral3722g00156	1187	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	365	1186	-	-
	Pral3722g00156	1187	MobiDBLite	consensus disorder prediction	1	40	-	-
	Pral3722g00156	1187	MobiDBLite	consensus disorder prediction	1	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3722g00156	Pral-Chr3722	642964	653670	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3722g00156	918	1124	Calmodulin-binding Proteins	AT3G56690	35.071	1.09e-30	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3722g00156	-		-	gmx:100794406	1513.82