Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3722g00110 ATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGGTTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGCTGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCTCCAGAGCTTCTGAGGGACGTGTTAATGAGGATCGAGGCCTCTGAAGATACATGGCCAGCCCGAAAACATGTGGTTGCCTGTGCTAGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTACAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATTTGTACCTCGGTTTAAACCAAGGAGAAGAGGGAATCGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGCGATGATGTATCAAGAGGCAGTAGCACTTACATTGGAAAGTTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGACGCTCACCCTCCAATTTGTGGTGCCAGAGTGACTAAATCTCGTTCAAGTAGACCAGTTAGTCTCAAGGAAGTGTCTCCAAGAGTCCCTGCTGGCAACTATCCCATTGCGCATGTCTCATATGATCTGAATGTTCTGGGCTCCAGATGGGGAAATGTTTACAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATTTCAGCTTCAGCTGTTGAGCCAGGAGGCGTGGCCCCTACTCAAACTCAATTCCTGCATCGCAGAATTGATACTTCTCCATCTATTCCTTTCTTTAGGTCAAAATCAACTCGGTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAATAAGTCTCCTAGGTGGCATGAGCAACTCCAATGTTGGTGTCTGAACTTCAATGGGCGAGTGACTGTGGCTTCTGTCAAAAATTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCTGAACAGGCTCAAGAAAATGTTATCATTCAGTTTGGAAAAGTGGGGAAAGATTTGTTTACGATGGATTATCAGTATCCCATCTCCGCTTTTGAAGCATTTGCGATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1248 0.4479 MSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACASVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLGLNQGEEGIDDGKFLLAARKCRRPTHTDYIISINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGARVTKSRSSRPVSLKEVSPRVPAGNYPIAHVSYDLNVLGSRWGNVYRGPRIMHCVMDAISASAVEPGGVAPTQTQFLHRRIDTSPSIPFFRSKSTRLENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVIIQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3722g00110 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Pral3722g00110 415 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Pral3722g00110 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Pral3722g00110 415 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Pral3722g00110 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Pral3722g00110 415 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Pral3722g00110 415 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Pral3722g00110 415 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Pral3722g00110 415 Pfam Tub family 116 410 IPR000007 -
Pral3722g00110 415 Gene3D Tubby Protein; Chain A 112 415 IPR025659 -
Pral3722g00110 415 CDD F-box_AtTLP-like 55 99 - -
Pral3722g00110 415 PANTHER TUBBY-RELATED 36 413 - -
Pral3722g00110 415 Pfam F-box domain 55 101 IPR001810 GO:0005515
Pral3722g00110 415 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
Pral3722g00110 415 SUPERFAMILY F-box domain 47 98 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3722g00110 Pral-Chr3722 485496 489443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3722g00110 1 415 TUB Transcription Factor Family AT2G47900 73.558 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3722g00110 Tub 1.8e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3722g00110 K19600 - gmx:100809257 698.738