Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3722g00109 ATGGCGACGATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGGTTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGCTGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCTCCAGAGCTTCTGAGGGACGTGTTAATGAGGATCGAGGCCTCTGAAGATACATGGCCAGCCCGAAAACATGTGGTTGCCTGTGCTAGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTACAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATTTGTACCTCGGTTTAAACCAAGAGGGAATCGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGCGATGATGTATCAAGAGGCAGTAGCACTTACATTGGAAAGTTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGACGCTCACCCTCCAATTTGTGGTGCCAGAGTGACTAAATCTCGTTCAAGTAGACCAGTTAGTCTCAAGGAAGTGTCTCCAAGAGTCCCTGCTGGCAACTATCCCATTGCGCATGTCTCATATGATCTGAATGTTCTGGGCTCCAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATTTCAGCTTCAGCTGTTGAGCCAGGAGGCGTGGCCCCTACTCAAACTCAATTCCTGCATCGCAGAATTGATACTTCTCCATCTATTCCTTTCTTTAGGTCAAAATCAACTCGGTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAATAAGTCTCCTAGGTGGCATGAGCAACTCCAATGTTGGTGTCTGAACTTCAATGGGCGAGTGACTGTGGCTTCTGTCAAAAATTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCTGAACAGGCTCAAGAAAATGTTATCATTCAGTTTGGAAAAGTGGGGAAAGATTTGTTTACGATGGATTATCAGTATCCCATCTCCGCTTTTGAAGCATTTGCGATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1233 0.4501 MATMSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACASVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLGLNQEGIDDGKFLLAARKCRRPTHTDYIISINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGARVTKSRSSRPVSLKEVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAISASAVEPGGVAPTQTQFLHRRIDTSPSIPFFRSKSTRLENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVIIQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3722g00109 410 CDD F-box_AtTLP-like 58 102 - -
Pral3722g00109 410 SUPERFAMILY Tubby C-terminal domain-like 107 410 IPR025659 -
Pral3722g00109 410 ProSitePatterns Tub family signature 2. 395 410 IPR018066 -
Pral3722g00109 410 PANTHER TUBBY-RELATED 39 408 - -
Pral3722g00109 410 Pfam F-box domain 58 104 IPR001810 GO:0005515
Pral3722g00109 410 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Pral3722g00109 410 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Pral3722g00109 410 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Pral3722g00109 410 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Pral3722g00109 410 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Pral3722g00109 410 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Pral3722g00109 410 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Pral3722g00109 410 Gene3D Tubby Protein; Chain A 115 410 IPR025659 -
Pral3722g00109 410 FunFam Tubby-like F-box protein 115 410 - -
Pral3722g00109 410 Pfam Tub family 119 405 IPR000007 -
Pral3722g00109 410 SUPERFAMILY F-box domain 50 101 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3722g00109 Pral-Chr3722 485463 489443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3722g00109 4 410 TUB Transcription Factor Family AT2G47900 74.634 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3722g00109 Tub 7.6e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3722g00109 K19600 - gmx:100809257 709.909