Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3722g00108 ATGGCGACGATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGGTTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGCTGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCTCCAGAGCTTCTGAGGGACGTGTTAATGAGGATCGAGGCCTCTGAAGATACATGGCCAGCCCGAAAACATGTGGTTGCCTGTGCTAGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTACAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATTTGTACCTCGGTTTAAACCAAGAGGGAATCGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGCGATGATGTATCAAGAGGCAGTAGCACTTACATTGGAAAGTTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGACGCTCACCCTCCAATTTGTGGTGCCAGAGTGACTAAATCTCGTTCAAGTAGACCAGTTAGTCTCAAGGAAGTGTCTCCAAGAGTCCCTGCTGGCAACTATCCCATTGCGCATGTCTCATATGATCTGAATGTTCTGGGCTCCAGATGGGGAAATGTTTACAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATTTCAGCTTCAGCTGTTGAGCCAGGAGGCGTGGCCCCTACTCAAACTCAATTCCTGCATCGCAGAATTGATACTTCTCCATCTATTCCTTTCTTTAGGTCAAAATCAACTCGGTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAATAAGTCTCCTAGGTGGCATGAGCAACTCCAATGTTGGTGTCTGAACTTCAATGGGCGAGTGACTGTGGCTTCTGTCAAAAATTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCTGAACAGGCTCAAGAAAATGTTATCATTCAGTTTGGAAAAGTGGGGAAAGATTTGTTTACGATGGATTATCAGTATCCCATCTCCGCTTTTGAAGCATTTGCGATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1251 0.4492 MATMSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACASVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLGLNQEGIDDGKFLLAARKCRRPTHTDYIISINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGARVTKSRSSRPVSLKEVSPRVPAGNYPIAHVSYDLNVLGSRWGNVYRGPRIMHCVMDAISASAVEPGGVAPTQTQFLHRRIDTSPSIPFFRSKSTRLENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVIIQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3722g00108 416 CDD F-box_AtTLP-like 58 102 - -
Pral3722g00108 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Pral3722g00108 416 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Pral3722g00108 416 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Pral3722g00108 416 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Pral3722g00108 416 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Pral3722g00108 416 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Pral3722g00108 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Pral3722g00108 416 Pfam Tub family 119 411 IPR000007 -
Pral3722g00108 416 SUPERFAMILY F-box domain 50 101 IPR036047 GO:0005515
Pral3722g00108 416 PANTHER TUBBY-RELATED 39 414 - -
Pral3722g00108 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Pral3722g00108 416 Gene3D Tubby Protein; Chain A 115 416 IPR025659 -
Pral3722g00108 416 Pfam F-box domain 58 104 IPR001810 GO:0005515
Pral3722g00108 416 SUPERFAMILY Tubby C-terminal domain-like 107 416 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3722g00108 Pral-Chr3722 485463 489443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3722g00108 4 416 TUB Transcription Factor Family AT2G47900 73.558 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3722g00108 Tub 7.4e-104 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3722g00108 K19600 - gmx:100809257 703.36