Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3722g00107 ATGGCGACGATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGGTTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGCTGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCTCCAGAGCTTCTGAGGGACGTGTTAATGAGGATCGAGGCCTCTGAAGATACATGGCCAGCCCGAAAACATGTGGTTGCCTGTGCTAGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTACAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATTTGTACCTCGGTTTAAACCAAGAAGAGGGAATCGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGCGATGATGTATCAAGAGGCAGTAGCACTTACATTGGAAAGTTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGACGCTCACCCTCCAATTTGTGGTGCCAGAGTGACTAAATCTCGTTCAAGTAGACCAGTTAGTCTCAAGGAAGTGTCTCCAAGAGTCCCTGCTGGCAACTATCCCATTGCGCATGTCTCATATGATCTGAATGTTCTGGGCTCCAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATTTCAGCTTCAGCTGTTGAGCCAGGAGGCGTGGCCCCTACTCAAACTCAATTCCTGCATCGCAGAATTGATACTTCTCCATCTATTCCTTTCTTTAGGTCAAAATCAACTCGGTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAATAAGTCTCCTAGGTGGCATGAGCAACTCCAATGTTGGTGTCTGAACTTCAATGGGCGAGTGACTGTGGCTTCTGTCAAAAATTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCTGAACAGGCTCAAGAAAATGTTATCATTCAGTTTGGAAAAGTGGGGAAAGATTTGTTTACGATGGATTATCAGTATCCCATCTCCGCTTTTGAAGCATTTGCGATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1236 0.4498 MATMSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACASVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLGLNQEEGIDDGKFLLAARKCRRPTHTDYIISINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGARVTKSRSSRPVSLKEVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAISASAVEPGGVAPTQTQFLHRRIDTSPSIPFFRSKSTRLENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVIIQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3722g00107 411 CDD F-box_AtTLP-like 58 102 - -
Pral3722g00107 411 PANTHER TUBBY-RELATED 39 409 - -
Pral3722g00107 411 SUPERFAMILY F-box domain 50 101 IPR036047 GO:0005515
Pral3722g00107 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Pral3722g00107 411 Pfam Tub family 119 406 IPR000007 -
Pral3722g00107 411 Gene3D Tubby Protein; Chain A 115 411 IPR025659 -
Pral3722g00107 411 FunFam Tubby-like F-box protein 115 411 - -
Pral3722g00107 411 Pfam F-box domain 58 104 IPR001810 GO:0005515
Pral3722g00107 411 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Pral3722g00107 411 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Pral3722g00107 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Pral3722g00107 411 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Pral3722g00107 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Pral3722g00107 411 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Pral3722g00107 411 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Pral3722g00107 411 SUPERFAMILY Tubby C-terminal domain-like 107 411 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3722g00107 Pral-Chr3722 485463 489443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3722g00107 4 411 TUB Transcription Factor Family AT2G47900 74.634 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3722g00107 Tub 1.2e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3722g00107 K19600 - gmx:100809257 705.286