Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral3722g00106 | ATGGCGACGATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGGTTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGCTGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCTCCAGAGCTTCTGAGGGACGTGTTAATGAGGATCGAGGCCTCTGAAGATACATGGCCAGCCCGAAAACATGTGGTTGCCTGTGCTAGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTACAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATTTGTACCTCGGTTTAAACCAAGAAGAGGGAATCGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGCGATGATGTATCAAGAGGCAGTAGCACTTACATTGGAAAGTTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGACGCTCACCCTCCAATTTGTGGTGCCAGAGTGACTAAATCTCGTTCAAGTAGACCAGTTAGTCTCAAGGAAGTGTCTCCAAGAGTCCCTGCTGGCAACTATCCCATTGCGCATGTCTCATATGATCTGAATGTTCTGGGCTCCAGATGGGGAAATGTTTACAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATTTCAGCTTCAGCTGTTGAGCCAGGAGGCGTGGCCCCTACTCAAACTCAATTCCTGCATCGCAGAATTGATACTTCTCCATCTATTCCTTTCTTTAGGTCAAAATCAACTCGGTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAATAAGTCTCCTAGGTGGCATGAGCAACTCCAATGTTGGTGTCTGAACTTCAATGGGCGAGTGACTGTGGCTTCTGTCAAAAATTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCTGAACAGGCTCAAGAAAATGTTATCATTCAGTTTGGAAAAGTGGGGAAAGATTTGTTTACGATGGATTATCAGTATCCCATCTCCGCTTTTGAAGCATTTGCGATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA | 1254 | 0.449 | MATMSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACASVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLGLNQEEGIDDGKFLLAARKCRRPTHTDYIISINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGARVTKSRSSRPVSLKEVSPRVPAGNYPIAHVSYDLNVLGSRWGNVYRGPRIMHCVMDAISASAVEPGGVAPTQTQFLHRRIDTSPSIPFFRSKSTRLENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVIIQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE | 417 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral3722g00106 | 417 | CDD | F-box_AtTLP-like | 58 | 102 | - | - | |
Pral3722g00106 | 417 | PRINTS | Tubby superfamily signature | 190 | 214 | IPR000007 | - | |
Pral3722g00106 | 417 | PRINTS | Tubby superfamily signature | 374 | 393 | IPR000007 | - | |
Pral3722g00106 | 417 | PRINTS | Tubby superfamily signature | 174 | 190 | IPR000007 | - | |
Pral3722g00106 | 417 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Pral3722g00106 | 417 | PRINTS | Tubby superfamily signature | 239 | 266 | IPR000007 | - | |
Pral3722g00106 | 417 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Pral3722g00106 | 417 | PRINTS | Tubby superfamily signature | 395 | 417 | IPR000007 | - | |
Pral3722g00106 | 417 | Pfam | Tub family | 119 | 412 | IPR000007 | - | |
Pral3722g00106 | 417 | ProSitePatterns | Tub family signature 2. | 402 | 417 | IPR018066 | - | |
Pral3722g00106 | 417 | Gene3D | Tubby Protein; Chain A | 115 | 417 | IPR025659 | - | |
Pral3722g00106 | 417 | Pfam | F-box domain | 58 | 104 | IPR001810 | GO:0005515 | |
Pral3722g00106 | 417 | SUPERFAMILY | Tubby C-terminal domain-like | 107 | 417 | IPR025659 | - | |
Pral3722g00106 | 417 | PANTHER | TUBBY-RELATED | 39 | 415 | - | - | |
Pral3722g00106 | 417 | SUPERFAMILY | F-box domain | 50 | 101 | IPR036047 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral3722g00106 | Pral-Chr3722 | 485463 | 489443 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral3722g00106 | 4 | 417 | TUB Transcription Factor Family | AT2G47900 | 73.558 | 0.0 | 610 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Pral3722g00106 | Tub | 1.1e-103 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral3722g00106 | K19600 | - | gmx:100809257 | 698.738 |