Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3722g00105 ATGGCGACGATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGGTTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGCTGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCTCCAGAGCTTCTGAGGGACGTGTTAATGAGGATCGAGGCCTCTGAAGATACATGGCCAGCCCGAAAACATGTGGTTGCCTGTGCTAGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTACAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATTTGTACCTCGGTTTAAACCAAGGAGAAGAGGGAATCGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGCGATGATGTATCAAGAGGCAGTAGCACTTACATTGGAAAGTTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGACGCTCACCCTCCAATTTGTGGTGCCAGAGTGACTAAATCTCGTTCAAGTAGACCAGTTAGTCTCAAGGAAGTGTCTCCAAGAGTCCCTGCTGGCAACTATCCCATTGCGCATGTCTCATATGATCTGAATGTTCTGGGCTCCAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATTTCAGCTTCAGCTGTTGAGCCAGGAGGCGTGGCCCCTACTCAAACTCAATTCCTGCATCGCAGAATTGATACTTCTCCATCTATTCCTTTCTTTAGGTCAAAATCAACTCGGTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAATAAGTCTCCTAGGTGGCATGAGCAACTCCAATGTTGGTGTCTGAACTTCAATGGGCGAGTGACTGTGGCTTCTGTCAAAAATTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCTGAACAGGCTCAAGAAAATGTTATCATTCAGTTTGGAAAAGTGGGGAAAGATTTGTTTACGATGGATTATCAGTATCCCATCTCCGCTTTTGAAGCATTTGCGATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1239 0.4504 MATMSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACASVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLGLNQGEEGIDDGKFLLAARKCRRPTHTDYIISINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGARVTKSRSSRPVSLKEVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAISASAVEPGGVAPTQTQFLHRRIDTSPSIPFFRSKSTRLENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVIIQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3722g00105 412 CDD F-box_AtTLP-like 58 102 - -
Pral3722g00105 412 PRINTS Tubby superfamily signature 191 215 IPR000007 -
Pral3722g00105 412 PRINTS Tubby superfamily signature 240 267 IPR000007 -
Pral3722g00105 412 PRINTS Tubby superfamily signature 175 191 IPR000007 -
Pral3722g00105 412 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Pral3722g00105 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Pral3722g00105 412 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Pral3722g00105 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Pral3722g00105 412 SUPERFAMILY F-box domain 50 101 IPR036047 GO:0005515
Pral3722g00105 412 Gene3D Tubby Protein; Chain A 115 412 IPR025659 -
Pral3722g00105 412 Pfam Tub family 119 407 IPR000007 -
Pral3722g00105 412 SUPERFAMILY Tubby C-terminal domain-like 107 412 IPR025659 -
Pral3722g00105 412 Pfam F-box domain 58 104 IPR001810 GO:0005515
Pral3722g00105 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Pral3722g00105 412 PANTHER TUBBY-RELATED 39 410 - -
Pral3722g00105 412 FunFam Tubby-like F-box protein 115 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3722g00105 Pral-Chr3722 485463 489443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3722g00105 4 412 TUB Transcription Factor Family AT2G47900 74.634 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3722g00105 Tub 1.9e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3722g00105 K19600 - gmx:100809257 705.286