Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3722g00103 ATGGCGACGATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGGTTTGAGGTGAAGTTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGCTGATGGTTTGAGGCAGAGTTGTTGGGCTAATATGCCTCCAGAGCTTCTGAGGGACGTGTTAATGAGGATCGAGGCCTCTGAAGATACATGGCCAGCCCGAAAACATGTGGTTGCCTGTGCTAGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACACTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAACTCTCTTCTACAGTGCTATATTAAACGGAATCGCAGTAATCAAACATATTATTTGTACCTCGGTTTAAACCAAGGAGAAGAGGGAATCGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACAGACTATATCATTTCTATAAACTGCGATGATGTATCAAGAGGCAGTAGCACTTACATTGGAAAGTTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGACGCTCACCCTCCAATTTGTGGTGCCAGAGTGACTAAATCTCGTTCAAGTAGACCAGTTAGTCTCAAGGAAGTGTCTCCAAGAGTCCCTGCTGGCAACTATCCCATTGCGCATGTCTCATATGATCTGAATGTTCTGGGCTCCAGATGGGGAAATGTTTACAGGGGCCCAAGGATAATGCATTGTGTTATGGATGCCATTTCAGCTTCAGCTGTTGAGCCAGGAGGCGTGGCCCCTACTCAAACTCAATTCCTGCATCGCAGAATTGATACTTCTCCATCTATTCCTTTCTTTAGGTCAAAATCAACTCGGTTGGAAAACTTCCAATCAGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAATAAGTCTCCTAGGTGGCATGAGCAACTCCAATGTTGGTGTCTGAACTTCAATGGGCGAGTGACTGTGGCTTCTGTCAAAAATTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCTGAACAGGCTCAAGAAAATGTTATCATTCAGTTTGGAAAAGTGGGGAAAGATTTGTTTACGATGGATTATCAGTATCCCATCTCCGCTTTTGAAGCATTTGCGATATGTCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1257 0.4495 MATMSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVADGLRQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACASVCRSWREIMKEIVKSPELSGKLTLPISLKQPGPRNSLLQCYIKRNRSNQTYYLYLGLNQGEEGIDDGKFLLAARKCRRPTHTDYIISINCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGARVTKSRSSRPVSLKEVSPRVPAGNYPIAHVSYDLNVLGSRWGNVYRGPRIMHCVMDAISASAVEPGGVAPTQTQFLHRRIDTSPSIPFFRSKSTRLENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVIIQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3722g00103 418 CDD F-box_AtTLP-like 58 102 - -
Pral3722g00103 418 SUPERFAMILY F-box domain 50 101 IPR036047 GO:0005515
Pral3722g00103 418 PANTHER TUBBY-RELATED 39 416 - -
Pral3722g00103 418 Gene3D Tubby Protein; Chain A 115 418 IPR025659 -
Pral3722g00103 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Pral3722g00103 418 PRINTS Tubby superfamily signature 240 267 IPR000007 -
Pral3722g00103 418 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Pral3722g00103 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
Pral3722g00103 418 PRINTS Tubby superfamily signature 175 191 IPR000007 -
Pral3722g00103 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Pral3722g00103 418 PRINTS Tubby superfamily signature 191 215 IPR000007 -
Pral3722g00103 418 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Pral3722g00103 418 SUPERFAMILY Tubby C-terminal domain-like 107 418 IPR025659 -
Pral3722g00103 418 Pfam F-box domain 58 104 IPR001810 GO:0005515
Pral3722g00103 418 Pfam Tub family 119 413 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3722g00103 Pral-Chr3722 485463 489443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3722g00103 4 418 TUB Transcription Factor Family AT2G47900 73.558 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral3722g00103 Tub 1.9e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3722g00103 K19600 - gmx:100809257 698.738