Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3722g00012 ATGTTTTCTGCAGCCATGTCCAATTCCGCTTCTTTGTCTCAAGAAGCCACTGTCTCTTCTGGTACTATAGTTCAGAACTTTACTGCACCAAGTCATATCGTTTCGATGAGCTCTCCTCATCAGCAGCCTCAAAAGATAAAGAAAAAAAGAAGCCTCCCCGGAAATCCAGACCCAGATGCTGAAGTGATTGCGTTGTCGCCAAAGACCCTTCTGGCCACCAATAGATATGTGTGTGAAATCTGCAACAAGGGTTTTCAGAGAGATCAGAACCTTCAGCTACACAGGAGAGGGCATAACCTTCCATGGAAGCTGAAACAAAGGAGCAACAAGGAGGTGAAAAAAAGAGTTTATGTTTGCCCCGAGCCTTCGTGTGTTCACCACAATCCCTCGAGAGCTCTGGGAGATCTCACGGGTATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTCACAAGTGCTCCAAAATCTACGCTGTTCAGTCAGATTGGAAAGCCCACTCCAAAACCTGTGGAACTAGAGAATACAGATGTGATTGCGGAATCCTTTTCTCCAGGAAGGACAGCTTCATAACTCACAGGGCATTTTGCGATGCCTTGGCTGAAGAAAGTGCAAGACTGGCGGCTAATCAACTAGCTTCCACGAACCCAATGTTATTTCAACCTCTCTTCCCTTTCCAAAATCAAATCATGATGAATCCCTGGGACCCATCCCAGGAAAACCCTAACCCTAGCAACTTTGATGCCGTCCAAATCAAGACGGAAGCTCAGTGTTTTCAGGTCCCATCCCTCTCTTCCCTGCCATTTCTTCAAGTGCAGCAGAATAATCAGAAGAACATGATAAACCCATTCTTAGGAACTCTCCATGTGCCCTCAAACGCCGCCACGTCGGCCCACCTGTCAGCCACTGCGCTTCTCAAAAAGGCTGCAACTCTGGGCTCCACTGCCCTCACAGGTCCAGGCGCTGCCGCTGCAGCTGATGGTGGACCACAGTCAACAATGGCTCACGTGACTCAGCCAAGCATGGGCGAGTTTGGACTTGGGACTCATCAGCAGATCGACTCAGCGGGTCACGACTACATTGGAGGGCTCATGAGCCGGAATGAAAGTGAGAGTCTGACCAGGGACTTCCTCGGCCTGAACGCCTATGTCGACGGCGGAAGAAACTGTGGCTCCGTTGACGTTAGCCAGCTGAACGCGAAGGATATGCTGATGTTCACGGGGGGCGTAGAGCATGATCAGTATCTTCCATACGATCACCATCATCAGTCTCTCTTCAGATCCCAACAAGATTTTGCATTCTTTGGGACCGTCACTGCGCCGGAGACGTGGGGGAGCTCTTGA 1353 0.4959 MFSAAMSNSASLSQEATVSSGTIVQNFTAPSHIVSMSSPHQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRYVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKRVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCHKCSKIYAVQSDWKAHSKTCGTREYRCDCGILFSRKDSFITHRAFCDALAEESARLAANQLASTNPMLFQPLFPFQNQIMMNPWDPSQENPNPSNFDAVQIKTEAQCFQVPSLSSLPFLQVQQNNQKNMINPFLGTLHVPSNAATSAHLSATALLKKAATLGSTALTGPGAAAAADGGPQSTMAHVTQPSMGEFGLGTHQQIDSAGHDYIGGLMSRNESESLTRDFLGLNAYVDGGRNCGSVDVSQLNAKDMLMFTGGVEHDQYLPYDHHHQSLFRSQQDFAFFGTVTAPETWGSS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3722g00012 450 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Pral3722g00012 450 Gene3D Classic Zinc Finger 75 99 - -
Pral3722g00012 450 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Pral3722g00012 450 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 399 IPR031140 -
Pral3722g00012 450 SMART c2h2final6 76 98 IPR013087 -
Pral3722g00012 450 SMART c2h2final6 152 172 IPR013087 -
Pral3722g00012 450 SMART c2h2final6 117 147 IPR013087 -
Pral3722g00012 450 Gene3D Classic Zinc Finger 110 200 - -
Pral3722g00012 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Pral3722g00012 450 FunFam protein indeterminate-domain 12-like 55 123 - -
Pral3722g00012 450 MobiDBLite consensus disorder prediction 33 60 - -
Pral3722g00012 450 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Pral3722g00012 450 Pfam Zinc finger, C2H2 type 76 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3722g00012 Pral-Chr3722 81323 84391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3722g00012 15 413 IDZ Gene Family AT4G02670 52.184 8.44e-123 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3722g00012 zf-C2H2 0.003 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3722g00012 K25870 - gmx:100812334 514.998