Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3707g00027 ATGACTTCAGTCGTGAAGATTGAAGGCGAACAACTCCCCGCCAACGATTTTCAGGATTTATCCCTCAAAGATAAGAGTGAAATGCGAAGTGAAGCAGAGATCCTCCAGGTGGGATCTGAGAACCACGGGGGAATCTGTGCGATTTGCCTGGATAAGATTGTACTGCAGGAAACTGCGCTCGTTAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATTCTTCGATGGGCCACGTATCGCCCAAAGGCCACCTGCCCGCAGTGTAAACATCCATTTGAGTTTCTTAATGTCCATCGCTCCCTTGATGGCAGGCTTCATGACTATATGTTTGAGGAAAGCGTCTGCCTACTTCTTAGAGCTTCATGGTTCAAACCTTTAAATGTAGAAGATCATGCTGAGCATGAAGATATGTATACGTATGATGACATTGAGGATTATTATTATGAATACGAGGATGAGGAAGATGACTTAGATGAAGCTTATTATGGCGGCTCATCAAGCATCCGCATCGGTAACCGGAGGTGGGGAGACAATGGCTATGTTAGGGCTGGTCGGCAACAAGCTAGGCCAGTCTATCAACCTAATAATTCCCAGAGCTCAGGGGCAAGTTCATCCCGTGAGCCGAAGAACAAAGAGGTTGTTAAAGGGGCTACAGCTGGACGACGAGCGAAGCGAGCACAGAAACGGGAGGCGGCTGATAAGGCTGCTGCGGCAAAGCATCAGCAGCATCTAATGAGGTTGGGAAGGAAGTGA 753 0.4794 MTSVVKIEGEQLPANDFQDLSLKDKSEMRSEAEILQVGSENHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYRPKATCPQCKHPFEFLNVHRSLDGRLHDYMFEESVCLLLRASWFKPLNVEDHAEHEDMYTYDDIEDYYYEYEDEEDDLDEAYYGGSSSIRIGNRRWGDNGYVRAGRQQARPVYQPNNSQSSGASSSREPKNKEVVKGATAGRRAKRAQKREAADKAAAAKHQQHLMRLGRK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3707g00027 250 SMART ring_2 46 88 IPR001841 -
Pral3707g00027 250 MobiDBLite consensus disorder prediction 185 250 - -
Pral3707g00027 250 MobiDBLite consensus disorder prediction 208 240 - -
Pral3707g00027 250 MobiDBLite consensus disorder prediction 189 207 - -
Pral3707g00027 250 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 250 - -
Pral3707g00027 250 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Pral3707g00027 250 Pfam Ring finger domain 46 89 IPR001841 -
Pral3707g00027 250 CDD RING-HC_Topors 46 92 - -
Pral3707g00027 250 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Pral3707g00027 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 109 IPR013083 -
Pral3707g00027 250 SUPERFAMILY RING/U-box 45 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3707g00027 Pral-Chr3707 241375 244583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3707g00027 1 250 C3H Transcription Factor Family AT5G19430 55.814 6.27e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3707g00027 - - qsa:O6P43_014716 326.635