Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3690g00004 ATGTGCGGTGGCTCAAAACCTAAGCTTTCTCCCTCTAATAACGACATGGATAGCGAGTTTCGGAAGCAGGATTTCTATGTTCTTGGTAACATCTCAAGTCTGCTGGAGCTGTCTGCCACCGATGATCTCGAAACCTTCAGAAGGGAAGTAGAAGAGAAGGGTTCTGACGTGAACGAGGAAAGTCTTTGGTATGGAAGAAGAATCGGATCGAAGAAGATGGGATTGGAGAAGAGGACGCCTCTCATGGTTGCTTCTTTATTCGGAAGCACCGAGGTGCTGAAGTATATTATTGAAACCGGTAGAGTTGATGTGAACAGGGCCTGTGGTTCCGATAAGGCCACGGCTCTCCACTGTGCTGTTGCCGGTGGCTCTGAATCCTCGCTTCAGATTGTTAAGCTCTTGCTTGATGCAAAGGCAAGTCCTGATTGCCTTGATGCTACTGGAAATAAGCCTGTTAATTTGATTGTTCCTGCCTTTAGTTCTTCATCCAACTTGCGAAGGAAGGCGATGGAGTCGTTGCTGAGAGGTGATGAATTAGGTGGGGAAAGTCATCAAATTATCGAACAGGAGGAGGAGCAACAGAAAACTGCGGCGCCTTCTTTAGCATCAAAAGAAGCAGCAGAGAAGAAAGAATATCCTGTTGATATATCTTTGCCTGACATAAACAATGGTATATACGGAACAGATGAGTTCAGGATGTACAGTTTCAAGGTGAAGCCGTGTTCGAGGGCATACTCTCATGACTGGACTGAGTGTCCATTTGTTCATCCCGGGGAGAATGCAAGGAGGAGGGATCCACGGAAGTATCCTTACAGCTGCGTTCCTTGCCCGGAGTTCCGCAAGGGAAGCTGCCCGAAGGGGGATGCCTGTGAGTACGCTCACGGTGTTTTTGAGTCATGGCTCCATCCTGCTCAATACCGAACAAGGCTTTGCAAGGATGAGACTGGTTGCTCAAGGAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTGCGCCCTGTGTATGCTTCCACTGGTTCAGCAATGCCTTCACCAAAATCCTTTTCTGCTAGTGCAATTGACACAACAGTTATGAGTCCATTAGCTCTTAGCTCCTCATCTTTGCCCATGTCAACTGTGTCAACACCACCCTTGTCTCCTTTGGCTGCTTCATCTCCCAAGGGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCCGCCATCCTTGCAACTCCCGGGTAGCAGGCTGAAGGCGGCCTTAAGTGCTAGGGATCTTGATTTGGAGATGGAACTGCTCGGGCTAGAAAGTCCGGCTAAACACCAGCAGCAGCAGCAGTTGATAGAAGAGATAGCTCGAATCTCTTCCCCATCATTCCGGAACACAGATTATAGTAGGATGGGTGATTTGAAGCCAACTAACCTCGATGACCTTTTGGGATCTGTTGATCCTTCTGTTCTTTCTCAACTTCATGGAATGCCTACTCAGCTGCAATCTCCAAATGGGCTTCAGATGCAGCAAAACATGAACCACCTTCGGGCAAGCTATCCCACCAACCTTCCTTCCTCACCGGCAAGAAATTCCTTGGGTTTAGGGTTTGATTCATCATCTGCTGTGGCAGCAGCAGTGATGAACTCCAGATCTGCAGCCTTCGCAAAGCGAAGTCAAAGTTTTATTGATCGTGGGGCAGTATCACCCCGCCATTTTGGGCAATCTACGGCCTCCAACACCGCCTGTAGGGTATCTTCTGCACTTTCAGATTGGAGATCCCCTGATGGGAAATTGGATTGGGGCATGAATGGAGATGAGCTGCACAAACTGAAGAAATCTGCTTCTTTTGGGATCAGAAACAATGGAAACACTAACGCTACTATGGCACGGTCTGAAAATTTTGAGCCAGATGTGTCGTGGGTTAATTCTTTGGTTAAAGATGCCCCCTCTGAGAAGCAGCAGCAACAATTTGATCCCAGTAGAGAGATGCTCCCACCATGGGTGGAGCAGCTATATAGGGAACACGAGCAGATAGTTGCATAA 2013 0.4799 MCGGSKPKLSPSNNDMDSEFRKQDFYVLGNISSLLELSATDDLETFRREVEEKGSDVNEESLWYGRRIGSKKMGLEKRTPLMVASLFGSTEVLKYIIETGRVDVNRACGSDKATALHCAVAGGSESSLQIVKLLLDAKASPDCLDATGNKPVNLIVPAFSSSSNLRRKAMESLLRGDELGGESHQIIEQEEEQQKTAAPSLASKEAAEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASAIDTTVMSPLALSSSSLPMSTVSTPPLSPLAASSPKGGSLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMELLGLESPAKHQQQQQLIEEIARISSPSFRNTDYSRMGDLKPTNLDDLLGSVDPSVLSQLHGMPTQLQSPNGLQMQQNMNHLRASYPTNLPSSPARNSLGLGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRGAVSPRHFGQSTASNTACRVSSALSDWRSPDGKLDWGMNGDELHKLKKSASFGIRNNGNTNATMARSENFEPDVSWVNSLVKDAPSEKQQQQFDPSREMLPPWVEQLYREHEQIVA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3690g00004 670 Gene3D - 271 333 - -
Pral3690g00004 670 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Pral3690g00004 670 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Pral3690g00004 670 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Pral3690g00004 670 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Pral3690g00004 670 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Pral3690g00004 670 Gene3D - 30 174 IPR036770 -
Pral3690g00004 670 PANTHER UNKEMPT FAMILY MEMBER 36 638 IPR045234 -
Pral3690g00004 670 SUPERFAMILY Ankyrin repeat 36 153 IPR036770 -
Pral3690g00004 670 Pfam Ankyrin repeats (many copies) 78 135 IPR002110 GO:0005515
Pral3690g00004 670 SMART ANK_2a 111 143 IPR002110 GO:0005515
Pral3690g00004 670 SMART ANK_2a 76 106 IPR002110 GO:0005515
Pral3690g00004 670 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3690g00004 Pral-Chr3690 37993 41202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3690g00004 31 642 C2H2 Transcription Factor Family AT5G12850 41.553 9.20e-145 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral3690g00004 Ank_4 6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3690g00004 - - gmx:100783376 924.465