Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3679g00073 ATGGCTTCTGCCATTTTCTCTGTACTTCAGGGCTCTGCTTTTCCTTCTTCTTCTATATCCCACAAAATCAACTCCTTCACCTTTCCGATCTCAGCCAAAGTTCCACTTGTTCACTTCAGAAAAACTCTGTCCGCTAAATCTCTTGCTTCTGTCGAATTTGACACATCATTGTCGCCTGCGATTCAGACATTCTGGCAGTGGCTATGGGAAGAAGGGGTCATCTCTTCGAAAACGCCAGTGGAGCCCGGGGTCGTGCCGGAAGGCCTCGGACTTATTGCCAGGAGAGACATTTCGCGAAACGAAGTCGTTTTGCAGGTGCCCAAGAGACTATGGATAAACCCCGATGCCGTGGCGCGTTCGGAGATTGGGAACGTTTGTAGCGGATTGAAGCCTTGGGTGTCGGTTGCTCTGTTCTTGATTAGAGAGAGGTCCAGGGATGAGTCTGTTTGGAAGCATTACTTCAAAATTCTCCCAGAGGTCACTGATTCGACGATATATTGGTCAGAGGAGGAGCTCTCTGAGCTTCAAGGTACTCAACTTCTGAATACAACACTAGCCGTGAAAGAATACGTGCAGAATGAGTTTCTAAAACTGGAAGAAGAAATCATACTCCCTAATAAGAAGCTTTTCCCTTCTCCGATCACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCTTTCTCTCGCCTTCGCAATGAAAATCTAGTGGTGATTCCGCTTGCAGACTTGATAAACCATAGTGCCAGAGTAACAACAGAAGATCATGCTTATGAAATTAAAGGGGCAGCAGGTCTTTTCTCGTGGGATTACCTGTTTTCTCTAAGGAGCCCTCTTTCTGTCAAGGCTGGGGAGCAGATATATATTCAATATGATTTGAAGAAAAGCAATGCAGAGTTGGCTCTAGACTACGGCTTCATTGAACCAAATTCAAACAGGAATGCATTTACTCTGACGCTACAAATATCTGAATCAGATCCGTTTTTTGATGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACGGCATATTTTGACATCTTCTTTGACCAAACACTTCCACCAGGAGTGCTTCCATATCTGCGTCTGGTGGCACTTGGTGGCACCGATGCTTTCTTGTTGGAATCTATATTCAAATCCGTTTGGGGTCATCTTCAGTTGCCTGTAAGCCGTGACAATGAGGAGCTAATATGTCGAGTTGTTCAAGATGCCTGCAAATCTGCCCTTGCTGGTTATCATACTACCATTGAAGAGGATGGGAAGTTAAAAGAAGAAAAGCTAGATTCAAGGCAGGCAATTGCAGTGGGAATAAGAGGAGGAGAAAAGAAGGTGCTGCAGCAGATTGAAGGGATCTTCAAGGAGAAAGAGTTGGAATTGGCTCAGTTAGAATATTATCAAGAAAGGAGGCTCAAAGATCTTGGTCTTTGCGGGGAAACTGGTGAGATCCTTGGTGATCTCAGCAAGTTCATGTAA 1488 0.4489 MASAIFSVLQGSAFPSSSISHKINSFTFPISAKVPLVHFRKTLSAKSLASVEFDTSLSPAIQTFWQWLWEEGVISSKTPVEPGVVPEGLGLIARRDISRNEVVLQVPKRLWINPDAVARSEIGNVCSGLKPWVSVALFLIRERSRDESVWKHYFKILPEVTDSTIYWSEEELSELQGTQLLNTTLAVKEYVQNEFLKLEEEIILPNKKLFPSPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSVKAGEQIYIQYDLKKSNAELALDYGFIEPNSNRNAFTLTLQISESDPFFDDKLDIAESNGFGETAYFDIFFDQTLPPGVLPYLRLVALGGTDAFLLESIFRXSVWGHLQLPVSRDNEELICRVVQDACKSALAGYHTTIEEDGKLKEEKLDSRQAIAVGIRGGEKKVLQQIEGIFKEKELELAQLEYYQERRLKDLGLCGETGEILGDLSKFM 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3679g00073 496 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 311 475 - -
Pral3679g00073 496 ProSiteProfiles SET domain profile. 71 295 IPR001214 GO:0005515
Pral3679g00073 496 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 60 442 - -
Pral3679g00073 496 Gene3D - 311 475 IPR036464 -
Pral3679g00073 496 CDD SET_RBCMT 80 310 IPR044431 GO:0016279|GO:0018022
Pral3679g00073 496 Gene3D set domain protein methyltransferase, domain 1 57 310 - -
Pral3679g00073 496 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 319 489 IPR036464 -
Pral3679g00073 496 Pfam Rubisco LSMT substrate-binding 327 451 IPR015353 -
Pral3679g00073 496 PIRSF RMT_SET 1 495 IPR011192 GO:0009507|GO:0030785
Pral3679g00073 496 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 57 309 - -
Pral3679g00073 496 Pfam SET domain 88 294 IPR001214 GO:0005515
Pral3679g00073 496 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 3 494 IPR011192 GO:0009507|GO:0030785
Pral3679g00073 496 SMART set_7 78 301 IPR001214 GO:0005515
Pral3679g00073 496 SUPERFAMILY SET domain 57 317 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3679g00073 Pral-Chr3679 1080541 1086032 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3679g00073 58 250 NAC Transcription Factor Family AT3G56570 28.713 2.78e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral3679g00073 SET 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3679g00073 K00592 - gmx:100818113 788.489