Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3679g00055 ATGGTGAAACTGAGGGAACACAGTGAAGTGGGAGAGACTGAATGGGCAGAAGCAGCCGCCATGGCTGCTAGTTTTCTGAAAGCTCGAAGATCAACAAGAAAGAGATTCATCGGGGTTCGTCAGAGACCTTCAGGGAGATGGGTGGCTGAAATCAAAGACACAATTCAGAACATAAGAGTTTGGTTAGGGACTTATGATTCTGCAGAAGAAGCTGCGAGAGCTTATGATGAAGCAGCTTGCTTGCTTCGTGGAGCGAACACTCGCAGAAACTTCTGGCCTTCTCAGTTTAGTAATTCCCCAGCAAATCCAGTTCTTCCCAGAAAGATTGCTAATCTCATCCTTCTTAGGCTCAAAGCTCGAAACCTTGCTTCTTCTTGTAATTTTTCCAGTAACCAAACAGAAGAAGAAGAAACAGCAGCAGAACCAAAGTTGACCCAGCTTGGTTATTTCCTTCCTGGATCTGATAATAATGGTGGTGAATTTTGTAGTGATGGAGTGATTGAAGAGGGGTGGGGGAGGAAAATGAATTTGGGAGTTGAAAAAGGAGAAAGTGAAGGAAAATCAGAAGAAAATGAGATGGCTAATCTCATGCTTTCTAGGCTAAACACGCGACTGTTCAGTTTTAGATCAGGAAACAAGACTAACTTGGATGAAGGAGGATTTAACGAAGAAAATTCTTCTGGGAAGCAATTGAAAGTGAATGATGAGGAAAACATTGAAACTAGATTCGAATCTGACATGTGGCGGCTCGTGGATTTCCAGTTTTTGGATAACGTGGGATCAACGGTTTGTTCTTCGTCTTCTTCTTCTCCATTTGAGATAGCAGAAGAGATGATGGGGCCAACAATGGATCAGCAAGACGGATATGAAAATGATGCCGAAAATTACGAAGCATCATTTCTCAGAGAAACTTTTAGGATGAAATTATGA 930 0.4226 MVKLREHSEVGETEWAEAAAMAASFLKARRSTRKRFIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDSAEEAARAYDEAACLLRGANTRRNFWPSQFSNSPANPVLPRKIANLILLRLKARNLASSCNFSSNQTEEEETAAEPKLTQLGYFLPGSDNNGGEFCSDGVIEEGWGRKMNLGVEKGESEGKSEENEMANLMLSRLNTRLFSFRSGNKTNLDEGGFNEENSSGKQLKVNDEENIETRFESDMWRLVDFQFLDNVGSTVCSSSSSSPFEIAEEMMGPTMDQQDGYENDAENYEASFLRETFRMKL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3679g00055 309 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Pral3679g00055 309 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Pral3679g00055 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 31 202 - -
Pral3679g00055 309 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Pral3679g00055 309 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Pral3679g00055 309 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Pral3679g00055 309 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Pral3679g00055 309 CDD AP2 34 91 IPR001471 GO:0003700|GO:0006355
Pral3679g00055 309 FunFam ethylene-responsive transcription factor RAP2-11 34 93 - -
Pral3679g00055 309 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3679g00055 Pral-Chr3679 789047 790091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3679g00055 30 113 AP2-EREBP Transcription Factor Family AT5G19790 63.095 6.14e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3679g00055 AP2 9.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3679g00055 K09286 - tcc:18610334 173.326