Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3673g00072 ATGGCGATGCAAGGTGTGCAGAAGAACACGCTGTACGTGGGAGGGTTAGCGGAGGAGGTGAACGAGTCCATCCTTCACGCTGCCTTCATACCCTTTGGCGACATCAAGGACGTCAAGACGCCCCTTGATCAGGCCACTCAGAAGCACCGATCTTTCGGCTTCGTCACCTTCTTGGAGAGGGAGGACGCCGCCGCCGCCATGGACAACATGGACGGCTCTGAACTTTACGGCCGTGTGCTCACTGTTAACTACGCCCTTCCTGAGCGTATAAAGGGTGGTGAACAGGGTTGGGCTGCGCAGCCAATTTGGGCGGATGCGGATACATGGTTTGAGCGGCAGCAGCAAGAAGAGGAAATGCGTCGTATTGAGGCAGAAAATCGAGCTGCAATGCAAGCTGCAGAAGACATACGTAGAAAACAACTAGCCCAAGAGCGAGAAGGAGAAAAGGAAGAGGAAATTGACATCAAGGATGATCCTATGGCAAAGGCTGAAGCAGAGGTTCTGAAAGAAAATGGTTCTTAA 522 0.5268 MAMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGSELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDIRRKQLAQEREGEKEEEIDIKDDPMAKAEAEVLKENGS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3673g00072 173 Gene3D - 2 151 IPR012677 -
Pral3673g00072 173 CDD RRM_PPIE 11 85 IPR034168 GO:0003723
Pral3673g00072 173 MobiDBLite consensus disorder prediction 139 173 - -
Pral3673g00072 173 FunFam Peptidyl-prolyl cis-trans isomerase 1 154 - -
Pral3673g00072 173 Coils Coil 112 139 - -
Pral3673g00072 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Pral3673g00072 173 PANTHER ATPASE E1 3 171 - -
Pral3673g00072 173 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Pral3673g00072 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Pral3673g00072 173 SMART rrm1_1 10 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3673g00072 Pral-Chr3673 922955 925485 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3673g00072 9 87 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.47e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3673g00072 - - gmx:100809447 296.975