LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3673g00071	ATGCAAAACCCCAATTCAAGAGTTGCCAAGGCCTTCAGCGCTATGAAGGATTTAGGAATTTCTTGTGATGAAGTGAAACCAGTGTTGCAAAAGCTGCTAAGATTGTATGATAAGAAATGGGAATATATTGAAGAAGATAATTATCGGACACTTGTAGATGCATACTTTGAGCTTAAGGAAGATAAGGAAGCGGGAGGTAAGAGAATAGCTCTCGTCAGTCATCATGCTGGGGAAAGACAAACTCAATCATTGGCAGATGAAGATGATATGCTCTTGTTAACCACGGACAACTCAAGACAAATACCATCTGCAGAAAACAATAAAACGCCTCTAAATACTTTTGGATTGGAAATCACTGAATCGTCTCAACCTTTGACAAGCAATATGAGACCTAAAATTGGTCCTCAATCACTGAAAACAAGAATTAACGAGATAGAAAAGATATCAGAGTTGCCTGGCATGGCCACTACAGATAGAAAATCAAATTCTAAGAAAGAATCTTCTGAAAGGCGTGGGGAAGAACCTGCTGATAAGCCTAGATCTGCTCCTATACGAAGAGAAAATGTACCAAATGGACATTATAGGAAAGAGATACTGAAGACAAAAACTGGACAAAATAAGTTCCATCTTGGATCCAGTTCAACAAGGTCTAGAGATAATAACAACCCCAGAAGCAGCAAGGCTAATATTGACATTGCCTCTTCATCATCGGGAGAAGTAAATGTGAAACAAAAGCGTTCACATCCTGAGCTTAACCATGCAAACATATTAACAAATGGCCCACAACAAGCTGTTGCTCAGGATGAGAGGAAGCTATGTCAGTTTCTTAGTGACATAACAAAAGGCTCAGAAAAGGTGAAGATATCATTGATAGATGAGTATGGTAGTGGGGAACTGCCAAAGTTTAATTACATACCACACAATCTAATATATCAGAGTGCTAATGTAAATATTTCACTGGCTCGTATTGCGGATGAAGGTTGCTGCTCAGATTGTTTAGGAGACTGTCTTTCTCAATCATTACCTTGTGCATGTGCTCAAGAGACTGGTGGAGAGTTTGCCTACACACTGGAGGGCTTGTTGAAAGACGAATTTCTAACATCTTGCTTGTCAATGAAAAAGGAACCTCAAGCTCATCACCTGGTGTACTGTCAGGAGTGCCCACTAGAGAGGTCCAAGAATGAATATATGCCTGAGCAATGCAAGGGGCATCTGATCAGGAGGTTCATTAAGGAATGTTGGAGGAAATGCGGATGTGACATGCAATGTGGAAATCGTATAGTGCAACGAGGTTTAAGATGCAAATTACAGGTGTTCTTTACTGGTGAACGAAAGGGCTGGGGCCTTAGAACACTGGAAGATTTGCCTAGGGGATCCTTTGTTTGTGAATATGTCGGTGAAATATTAACCAACATGGAGTTGTATGAAAGAATTGTGCACAAAAATGGCAATGAGAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCAGAAGGAGTGTTAGAAGATGAGGAGGCACTGTGTCTAGATGCAACATATAATGGAAATGTTGCCAGATTTATCAATCATAGATGCTCAGATGCAAATCTGATTGACATTCCCGTTGAAGTGGAGACTCCTGATCGCCATTATTATCATCTTGCCTTCTTCACTAACAGGAAAGTGCGAGCTTATGAGGAGTTGACGTGGGATTATGGTATTGACTTTGATGATCATGATCACCCTATCAAAGCATTCCAATGTTGCTGTGGGAGCTCATTCTGCCGCAACAAGAAGTGGAAAGGGAAGCGAAAATTAGTAAAACGAGCATGA	1818	0.4081	MQNPNSRVAKAFSAMKDLGISCDEVKPVLQKLLRLYDKKWEYIEEDNYRTLVDAYFELKEDKEAGGKRIALVSHHAGERQTQSLADEDDMLLLTTDNSRQIPSAENNKTPLNTFGLEITESSQPLTSNMRPKIGPQSLKTRINEIEKISELPGMATTDRKSNSKKESSERRGEEPADKPRSAPIRRENVPNGHYRKEILKTKTGQNKFHLGSSSTRSRDNNNPRSSKANIDIASSSSGEVNVKQKRSHPELNHANILTNGPQQAVAQDERKLCQFLSDITKGSEKVKISLIDEYGSGELPKFNYIPHNLIYQSANVNISLARIADEGCCSDCLGDCLSQSLPCACAQETGGEFAYTLEGLLKDEFLTSCLSMKKEPQAHHLVYCQECPLERSKNEYMPEQCKGHLIRRFIKECWRKCGCDMQCGNRIVQRGLRCKLQVFFTGERKGWGLRTLEDLPRGSFVCEYVGEILTNMELYERIVHKNGNERHTYPVTLDADWGSEGVLEDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLAFFTNRKVRAYEELTWDYGIDFDDHDHPIKAFQCCCGSSFCRNKKWKGKRKLVKRA	605

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3673g00071	605	MobiDBLite	consensus disorder prediction	146	256	-	-
	Pral3673g00071	605	MobiDBLite	consensus disorder prediction	159	203	-	-
	Pral3673g00071	605	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	605	IPR025776	-
	Pral3673g00071	605	SUPERFAMILY	SET domain	286	591	IPR046341	-
	Pral3673g00071	605	Gene3D	-	1	61	IPR043017	-
	Pral3673g00071	605	SMART	set_7	434	574	IPR001214	GO:0005515
	Pral3673g00071	605	ProSiteProfiles	SET domain profile.	434	568	IPR001214	GO:0005515
	Pral3673g00071	605	SMART	preset_2	276	418	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pral3673g00071	605	Pfam	Ubiquitin-binding WIYLD domain	5	60	IPR018848	-
	Pral3673g00071	605	Pfam	SET domain	446	568	IPR001214	GO:0005515
	Pral3673g00071	605	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	600	-	-
	Pral3673g00071	605	Gene3D	SET domain	279	593	IPR046341	-
	Pral3673g00071	605	MobiDBLite	consensus disorder prediction	205	242	-	-
	Pral3673g00071	605	FunFam	SET-domain containing protein lysine methyltransferase family protein	279	593	-	-
	Pral3673g00071	605	Pfam	Pre-SET motif	279	426	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pral3673g00071	605	CDD	SET_SETDB-like	300	568	-	-
	Pral3673g00071	605	ProSiteProfiles	Pre-SET domain profile.	328	431	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3673g00071	Pral-Chr3673	911473	915826	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3673g00071	410	591	C2H2 Transcription Factor Family	AT2G23740	40.107	8.24e-32	130

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pral3673g00071		Pre-SET	1.8e-16	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3673g00071	-		-	vum:124833883	667.537