Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3673g00061 ATGGAATCTTGGAGTTATCTCTCAGAAGAGAAAGGCTATTTTATTACTGATGAGATGGATTTTTCTCTGGAAGCTTTCATTAAAGGCAAAAAAGGAAAAGATTCCTGTAACTTGGAGAGAGATGAGTTTGGTTCTAGCGGTGGGGAAGCCAAAAGCATGGAAGTTTCTGACCTGGGATTTCATGACTTGTTTCAAAATGAGCTAGATAGAAATCATAATAAAAGAGTGACTTCCTCAACCAATGTTATTGCCATGGATTCATCTTTTGCAGAACAAGAATCTCAGCCAATGTTTTTAGGTTCTCTGGTTGAATCTAAAAGTCCCACTTCATCACTGATTGATTTGAAGCTGGGGAGAATAGCAGATTGTAAAGATCCAAGTAGTGATAAAATTGCAAGAAGAGCTCGGTCTTCTGGCTCACCATCTCAGACGCCTTTTTGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCACAGAGTTTGTGATGCTCACTCCAAGACAGCCAAAGTTGTTGTTAATGGCATCGAGCAGAGGTTTTGTCAGCAGTGTAGCAGGTTCCATTTGCTAGCTGAGTTCGATGAGGGCAGGCGCAGTTGTCGCAGACGTCTAGCGGGACACAATCAACGCAGAAGGAAGCCTCAGTTTGATTACGTATCTGGCAAACCCTGCAAGATGCTCCAATTACATCAAGGGACCAAAAATCTGGAGGCTTCATTTCAGAAGAGACCCCAGTTTGCCTCACAAGACATGATCAGTTGTGGCATATTGTATGACCAAACCGATCTCAGTGTCACACCCACTCAGGAGAAGTTGTCAACACCCTCATATGCTAGCTGTGCTCTCTCTCTTCTGTCAGTTCAGTCACAGAACCCGTCATGCCTCTCAGCAGGAAACCCGGGACCTAGTTCCTGTGCTCGTCTCGCCATCTGCACGAATCACAGCGATGAAAAAGATTCCAAAGTACATTTGGGCATAAACCCTGCGGACAAGTATGTGCAAAATGAGTCATCATCACATGGATTGAGCTCCATGGAAGCTACCAAGAAGGGATCCATATTGCTATCTGATGCTGATTGTGCTCATCATCTTCAGGTTTGCAAAGATCATAAGTACCAAACATCAGAACTACTGGATGCCACACACTATGTTTCACCTGAGGATGGAGCCACTGTTGATCTATTGCAATTATCTTCACATCTTCAAAGGGTGGAGCATCAGAGGAAGTCATTTATTCAGCGAGGCCTTTGA 1272 0.4371 MESWSYLSEEKGYFITDEMDFSLEAFIKGKKGKDSCNLERDEFGSSGGEAKSMEVSDLGFHDLFQNELDRNHNKRVTSSTNVIAMDSSFAEQESQPMFLGSLVESKSPTSSLIDLKLGRIADCKDPSSDKIARRARSSGSPSQTPFCQVYGCNMDLSSSKEYHKRHRVCDAHSKTAKVVVNGIEQRFCQQCSRFHLLAEFDEGRRSCRRRLAGHNQRRRKPQFDYVSGKPCKMLQLHQGTKNLEASFQKRPQFASQDMISCGILYDQTDLSVTPTQEKLSTPSYASCALSLLSVQSQNPSCLSAGNPGPSSCARLAICTNHSDEKDSKVHLGINPADKYVQNESSSHGLSSMEATKKGSILLSDADCAHHLQVCKDHKYQTSELLDATHYVSPEDGATVDLLQLSSHLQRVEHQRKSFIQRGL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3673g00061 423 Pfam SBP domain 147 220 IPR004333 GO:0003677
Pral3673g00061 423 SUPERFAMILY SBT domain 145 226 IPR036893 GO:0003677|GO:0005634
Pral3673g00061 423 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Pral3673g00061 423 Gene3D - 137 208 IPR036893 GO:0003677|GO:0005634
Pral3673g00061 423 FunFam Squamosa promoter-binding-like protein 14 138 208 - -
Pral3673g00061 423 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 88 310 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3673g00061 Pral-Chr3673 842800 849088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3673g00061 113 415 SBP-box Gene Family AT1G69170 39.062 7.51e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral3673g00061 SBP 3e-31 No_clan