Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3673g00059 ATGGGTAGAGGAAGAGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGGCAAGTGACATTTGCCAAGCGGAGGAATGGGCTTCTCAAGAAGGCTTACGAACTCTCGGTACTCTGCGATGCTGAGGTTGCTCTTATCATCTTCTCCAACCGAGGCAAGCTCTATGAGTTCTGCAGCAACTCAAGCATGGCTAACACAATTGAACGGTACCAAAGATGCAGCTATGGTGCCTTGGAAGCAGACCAACCGGCAATGGAGACACAGAGGTGCTACCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGCGCACTCAGAGAAATTTGCTTGGGGAAGAATTGGAGCAGTTGGGCATAAAGGAGCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCATTGAAGCAAATCAGGTCCAATAAGACACAACATTTGCTTGATCAACTCGCTGATTTGCAAAGGAAGGAAGAGATGCTTCTGGAAACTAACCGTGTCTTGAGGTGCAAGTTGGACGAAATAAATATATCCTTTCAACCATCATGGGAAGCTAGGGAGGGAAATGATTCATACGGCCGCCAGCCTCCACACTCCGAGGGATTCTTTGGGATTGCACAATGCAGTCGTACATTGCAGATGGGCATGGAGAAGATACTGGAGCGCTATGAAAGATATAACTATGCTGAGAGGCAGCTTGCTGGAAATGATTCCGGGACGCAGGAAAACTGGACCTTTGAGTATTCTAGACTGAAGGCTAAGATTGATCTCATGCAAAGAAACCAAAGCCATTATATGGGAGAAGATCTTGCTTCACTCAGCCTCAAAGAGCTTCAGAGTTTAGAGCAGCAATTAGAAACTGCTATCAAACATATCCGTACACGCAAAAATCAGCTGATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAGGGCCATACAGGAACAAAATAGCATGCTTGCAAAGAAGATAAAGGAGAGGGAGAAGGCTGCCGCAACAGCAGAGGCACAGCAGGCATGGGAGCAGCCAAGCCATGAAGCTGCTCCTAACCCTTCTTTCTTACTCCCTCATCATCCTCTTCCCTCTCTAATCATCAGTGGTAATTACGCTGAAGAAGAAACGACGATGGGAAGGAACGATCTTGACCTGACCCTGGAGCCAATATTGCTTTGTTTGCACTGTAACTGTGGAGGCATGCGTCATGCGATTGCATGCTTCATTATATATGTATCAGGTAATATAACTCATATTGAAGATATTGCTAATTGTGATAAAAGTGAATCTCATATTGATAAATTATATACTGATTCTGAAGAAGAGGATTATGATGATGATGAGCTAGGAGAAGGGAAAAGGGTGAAAGGATTGATGATGATTCTATTTTGA 1386 0.4466 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSNSSMANTIERYQRCSYGALEADQPAMETQRCYQEYLKLKSKVEALQRTQRNLLGEELEQLGIKELEQLERQLDSSLKQIRSNKTQHLLDQLADLQRKEEMLLETNRVLRCKLDEINISFQPSWEAREGNDSYGRQPPHSEGFFGIAQCSRTLQMGMEKILERYERYNYAERQLAGNDSGTQENWTFEYSRLKAKIDLMQRNQSHYMGEDLASLSLKELQSLEQQLETAIKHIRTRKNQLMYESISELQKKERAIQEQNSMLAKKIKEREKAAATAEAQQAWEQPSHEAAPNPSFLLPHHPLPSLIISGNYAEEETTMGRNDLDLTLEPILLCLHCNCGGMRHAIACFIIYVSGNITHIEDIANCDKSESHIDKLYTDSEEEDYDDDELGEGKRVKGLMMILF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3673g00059 461 Coils Coil 303 326 - -
Pral3673g00059 461 MobiDBLite consensus disorder prediction 327 348 - -
Pral3673g00059 461 FunFam MADS-box transcription factor 1 13 88 - -
Pral3673g00059 461 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pral3673g00059 461 Coils Coil 121 144 - -
Pral3673g00059 461 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral3673g00059 461 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3673g00059 461 PANTHER SERUM RESPONSE FACTOR HOMOLOG 212 329 - -
Pral3673g00059 461 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral3673g00059 461 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pral3673g00059 461 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3673g00059 461 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3673g00059 461 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3673g00059 461 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3673g00059 461 ProSiteProfiles K-box domain profile. 240 330 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3673g00059 461 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3673g00059 461 Coils Coil 274 297 - -
Pral3673g00059 461 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3673g00059 461 Pfam K-box region 239 324 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3673g00059 461 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3673g00059 Pral-Chr3673 767343 792268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3673g00059 215 326 MADS-box Gene Family AT5G15800 37.500 5.61e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3673g00059 K-box 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3673g00059 K09264 - sly:778278 451.44