Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3673g00057 ATGGAGGTCAATCCACCAGAGACCTCTGCTCAACACCAAAAGCCTAAGAGAAAACGAAGCCGGGAAGACCCAGAACTCGAACGGCTGAACTCGTTGTCGTGGAACCCCTCTTTTGTTGAAAATGACGATCCTTTTTCTTTGCTTGTAGGCTCAAATGAACTTGAAGGAGGTTTTCTTTCACTGGAAGAGATTGACGAAGCTGAGTATGGCTTAGAAACTCCTGATCCCAAAAAAGGCAAGAGGAAAAAGAAGTCTAAACATAAAGCAGATTTGAAGAAACAGAAGCTAAGTGAAGTAGAGGGTGCCTGTGATGATGAGGCTGGGACAAATTTGGAAGAAAACAAGGATGAGAGTGTAATGACTGTAAAGAAGGAAAAGAAGAAGAAAAATAAGAAGAAAAAGGAAGCTGCTGATCAAGTTATTAACGTGAAGGATGACAAAGATGAAGAGGCCATCGACGAAATGGAATTTTATGCATGGAATGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATTTACAAGCTTGGGTTCAAGGAGCCCACGCCAATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTTCTGAGACCGGATCTGGGAAAACGCTTGCTTTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGGGAAAAAGCTGCCAGGATGGTTGAACAAAGGGGTGAAGAACCTGACCAATATGCTCCTACTGGCCTTCTAAGGGCTCTTATAATTGCTCCAACCAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAATACATCAATGTTAGGGTGACTCCTATAGTTGGGGGCATTTTAGCAGAAAAACAGGAGAGACTCTTAAAAGCACGGCCTGAGATTGTTGTTGGGACTCCAGGGAGGTTATGGGAACTGATGTCAGCTGGAGAGAAGCATCTAGTTGAGTTACATTCCTTGTCATTCTTTGTGCTTGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAATTGCAATCAATAATTGACATGCTTCCCATGTCCAACACGTCTGGTGTGGATGATCCTCAATCTGCACAACATTGTGTTACAATTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCAGCAACTGTTGCATTATCTGCTGATTTTCGCAAGAAGCTAAAGCGTGCTTCAACAAAACAAAATCAGTCAGTGTTAGATGGATTTAATTCCATTGAAGCCCTGTCCGAACGTGCAGGAATGAGACCCAATGCTGCAGTGATTGATCTCACTAATCCAACAATATTGGCAGCCAAGCTTGAAGAATCATTTATTGAATGCAAAGAAGAAGACAAAGATGCGTATCTGTACTATATCTTGACTGTCCATGGACAAGGTCGCACAATAGTATTCTGTACATCAATAGCAGCTTTGCGTCATATCTCTTCTCTACTGCGCATTCTTGACGTTAACGCTGTGACTCTTCATGCTCAAATGCAACAGCGAGCACGTTTAAAGGCCATTGATCGCTTTCGTGAAGATGAAAGTGGCATACTTGTTGCTACTGATGTTGCAGCAAGGGGTCTTGATATTCCTGGTGTTAGAGCGGTTGTCCACTATCAGCTTCCCCATTCGGCAGATGTTTATGTGCATAGAAGTGGAAGAACAGCTAGGGCTTCGGCTGAAGGATGCAGCATTGCTTTGATCTCACCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCCTTTTCCAAGGACACTTTTAAGCGATTTCCTTTAGAAAATTCATTCATGCCGGAAGTTCTGAAGCGATTATCCATTGCCCGTCAAATAGACAAAATAATACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAGTCAGTGGAGTTAGTTGTGGAAAATTATGACAGTGAGGAGGAAAGGGTGAAGAAATATAGGCAAATGAAAGCCAGCTCTACTCAGTTGAAGAAGCTGCAGCAGGAACTCAAAGCACTTCTTTCTCGCCCCTTACAGTCAAAACAATTTTCACACCGATATTTAGCAGGGGGGGGGATCACACCTCTGATGCAGGAACAGTTCCAACAATTAGCCAGACAAAAGCAAGGAAGTGCAGGAGTAACTGGCAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCTCTTCAAGCTTTGCGGAATGCTGGTGAGGAGGTGCGCATGGCCGTCAAAGACACAGGAAAGAGGATGGAGAATTTGAAACGAAAGAGGAAAGACGAGAAAAAACGTTTGCGTGATCAGCGAAGGAAGCAAAAGAGAACGATGAAAAATGGAGAATGA 2361 0.4312 MEVNPPETSAQHQKPKRKRSREDPELERLNSLSWNPSFVENDDPFSLLVGSNELEGGFLSLEEIDEAEYGLETPDPKKGKRKKKSKHKADLKKQKLSEVEGACDDEAGTNLEENKDESVMTVKKEKKKKNKKKKEAADQVINVKDDKDEEAIDEMEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKAARMVEQRGEEPDQYAPTGLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNTSGVDDPQSAQHCVTISSYQRKKRQTLVFSATVALSADFRKKLKRASTKQNQSVLDGFNSIEALSERAGMRPNAAVIDLTNPTILAAKLEESFIECKEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSLLRILDVNAVTLHAQMQQRARLKAIDRFREDESGILVATDVAARGLDIPGVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFKRFPLENSFMPEVLKRLSIARQIDKIIRKDSQEKAQKSWFERNAESVELVVENYDSEEERVKKYRQMKASSTQLKKLQQELKALLSRPLQSKQFSHRYLAGGGITPLMQEQFQQLARQKQGSAGVTGKGKLVVIGQDCVEALQALRNAGEEVRMAVKDTGKRMENLKRKRKDEKKRLRDQRRKQKRTMKNGE 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3673g00057 786 Pfam DEAD/DEAH box helicase 182 390 IPR011545 GO:0003676|GO:0005524
Pral3673g00057 786 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Pral3673g00057 786 SMART helicmild6 484 565 IPR001650 -
Pral3673g00057 786 Coils Coil 218 238 - -
Pral3673g00057 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 581 IPR027417 -
Pral3673g00057 786 MobiDBLite consensus disorder prediction 750 786 - -
Pral3673g00057 786 Pfam Helicase conserved C-terminal domain 456 564 IPR001650 -
Pral3673g00057 786 Coils Coil 661 681 - -
Pral3673g00057 786 MobiDBLite consensus disorder prediction 11 28 - -
Pral3673g00057 786 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 329 337 IPR000629 -
Pral3673g00057 786 MobiDBLite consensus disorder prediction 762 778 - -
Pral3673g00057 786 Coils Coil 750 781 - -
Pral3673g00057 786 Gene3D - 441 689 IPR027417 -
Pral3673g00057 786 CDD DEADc_DDX24 169 434 - -
Pral3673g00057 786 MobiDBLite consensus disorder prediction 68 98 - -
Pral3673g00057 786 CDD SF2_C_DEAD 445 574 - -
Pral3673g00057 786 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 444 605 IPR001650 -
Pral3673g00057 786 Coils Coil 119 139 - -
Pral3673g00057 786 PANTHER RNA HELICASE 125 706 - -
Pral3673g00057 786 Gene3D - 116 408 IPR027417 -
Pral3673g00057 786 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 407 IPR014001 -
Pral3673g00057 786 SMART ultradead3 177 417 IPR014001 -
Pral3673g00057 786 MobiDBLite consensus disorder prediction 1 28 - -
Pral3673g00057 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3673g00057 Pral-Chr3673 745071 766336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3673g00057 159 605 Eukaryotic Initiation Factors Gene Family AT5G11200 29.451 1.25e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3673g00057 K14805 - gmx:100806018 1132.47